Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3689 242 9e-62 seq4446 86.0 2e-14 seq9963 77.0 8e-12 seq84 77.0 8e-12 >seq3689 Length=887 Score = 242 bits (268), Expect = 9e-62 Identities = 298/405 (74%), Gaps = 24/405 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||| ||| | |||||||||||||||||| | | ||||||||||| || |||| Sbjct 16 GCATCTGCACGGAGATTTCAATTTCACTGAGCCCATGTTGGAGACAGCGGGGCAGTCGTG 75 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| | Sbjct 76 ACGCCATTCATGCAGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTCA 135 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC-TTCGCG----TT---AGCTA 184 |||||||||||||||||| || |||| | ||||| ||| || || | || Sbjct 136 GAGTTACGGCCGCCGTTTACTGGACCTTCAGTTGAGAGCTTTCTCGAAAATTTCGATCTT 195 Query 185 ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGT 244 ||||| | || | || || ||||||||||||||||| |||| |||| | || | Sbjct 196 ACCCCTCCCTTTTAGCTGCCAGCACCGGGCAGGCGTCAGACCCAATACTTGATGTTGCCA 255 Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA 304 ||||| |||| ||||||||||||||||||||||| | ||| | | | | || | Sbjct 256 TTTTGCTGAGTCCTGTGTTTTTAATAAACAGTCGCCACCCCCTATTCTGTGCCGCCTTCT 315 Query 305 TGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 | |||| |||||||| ||| | |||| |||||||||||||| | Sbjct 316 T--GCTT-TGGAGCAAG-------------AAGGCCCTCCTTATCCCGAAGTTACGGAGT 359 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGT 409 | |||||| ||||||||| | ||| |||| | ||||||||| Sbjct 360 CAATTTGCCGAGTTCCTTCAACATGGTTTTCTCTATCGCCTTGGT 404 >seq4446 Length=441 Score = 86.0 bits (94), Expect = 2e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| ||| ||||||| |||||||| ||||| ||| Sbjct 439 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 380 Query 397 CAAGCGCCTTGGTATTCTCTACCCA 421 | || ||| ||||||||||||||| Sbjct 379 CGCGCCCCTAGGTATTCTCTACCCA 355 >seq9963 Length=320 Score = 77.0 bits (84), Expect = 8e-12 Identities = 99/136 (73%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG--CGTTAGCTAACCCC 189 || ||||||||||||||| |||||||||||| || |||||| || ||||| Sbjct 185 ATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTTCTTCCGAAGAATAACCAA 244 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | || ||||||||||||||||||||||||| ||| ||| | ||| || | | Sbjct 245 CTTCCTTCACCTTCCGGCACCGGGCAGGCGTCAGCCCCCATATCTTGTCTTGCGACGTAG 304 Query 250 CAGAGTGCTGTGTTTT 265 | ||| ||||||||| Sbjct 305 CGGAGACCTGTGTTTT 320 >seq84 Length=2363 Score = 77.0 bits (84), Expect = 8e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 390 GCATCTTCACGGACATGTCTATTTCACCGAGTCTCTCTCTGAGACAGTGCCCAGATCGTT 449 Query 73 ACGCCATTCGTGCAGGTCGGAACTT 97 ||||| ||||||| ||||||||||| Sbjct 450 ACGCCTTTCGTGCGGGTCGGAACTT 474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260502564672