Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3689 248 2e-63 seq84 104 5e-20 seq9963 102 2e-19 seq4446 77.0 7e-12 >seq3689 Length=887 Score = 248 bits (274), Expect = 2e-63 Identities = 278/369 (75%), Gaps = 22/369 (6%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| | |||| ||||||||| ||| | || | ||||||| | | |||| Sbjct 16 GCATCTGCACGGAGATTTCAATTTCACTGAGCCCATGTTGGAGACAGCGGGGCAGTCGTG 75 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| | Sbjct 76 ACGCCATTCATGCAGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTCA 135 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCT---TCGA-----TTGCTCTA 178 |||||||||||||||||||||| ||| |||| | ||| |||| | | ||| Sbjct 136 GAGTTACGGCCGCCGTTTACTGGACCTTCAGTTGAGAGCTTTCTCGAAAATTTCGATCTT 195 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || |||| || | || ||||||||||||||||||||| || |||| | | |||| | Sbjct 196 ACCCCTCCCTTTTAGCTGCCAGCACCGGGCAGGCGTCAGACCCAATACTTGATGTTGCCA 255 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 || || || ||||||||||| ||||||||||| |||||||| ||| |||| || Sbjct 256 TTTTGCTGAGTCCTGTGTTTTTAATAAACAGTCGCCACCCCCTATTCTGTGCCGCCT-TC 314 Query 299 AT-----------AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTT 347 | ||| |||| | |||| |||| ||||||||| |||| ||||||||||| Sbjct 315 TTGCTTTGGAGCAAGA-AGGCCCTCCTTATCCCGAAGTTACGGAGTCAATTTGCCGAGTT 373 Query 348 CCTT-AACA 355 |||| |||| Sbjct 374 CCTTCAACA 382 >seq84 Length=2363 Score = 104 bits (114), Expect = 5e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | |||||||||||||| |||||| Sbjct 390 GCATCTTCACGGACATGTCTATTTCACCGAGTCTCTCTCTGAGACAGTGCCCAGATCGTT 449 Query 67 ACGCCTTTCGTGCGGGTCGGAACTT 91 ||||||||||||||||||||||||| Sbjct 450 ACGCCTTTCGTGCGGGTCGGAACTT 474 >seq9963 Length=320 Score = 102 bits (112), Expect = 2e-19 Identities = 106/138 (77%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 126 ATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTC----TAACA 181 |||||||||||||||||| || ||||||| || | ||||| || | |||| Sbjct 185 ATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTTC--TTCCGAAGAATAACC 242 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTT 241 | |||| ||||||| ||||||||||||||||||| || ||| | |||||||||| | Sbjct 243 AACTTCCTTCACCTTCCGGCACCGGGCAGGCGTCAGCCCCCATATCTTGTCTTGCGACGT 302 Query 242 AGCAGAAACCTGTGTTTT 259 ||| || ||||||||||| Sbjct 303 AGCGGAGACCTGTGTTTT 320 >seq4446 Length=441 Score = 77.0 bits (84), Expect = 7e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Minus Query 306 GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 439 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTTCCTTA 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062149369216