Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1716 419 7e-115 seq3514 187 7e-45 seq2853 114 4e-23 >seq1716 Length=1290 Score = 419 bits (464), Expect = 7e-115 Identities = 400/511 (78%), Gaps = 23/511 (5%) Strand=Plus/Plus Query 6 CCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGT 65 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 390 CCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGT 449 Query 66 TTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCC--TCTGACCCCTCTAG 123 ||||||||| ||||||||||||||||||||| |||||||| | | | ||||| | Sbjct 450 TTAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATGCCGTATACCCCCTTGAA 509 Query 124 AGATAGAGGTTTCCCCTT--------------CGGGGGACAGAGTGACAGGTGATGCATG 169 ||| | || |||| | ||| ||| | | ||||||| |||||| Sbjct 510 AGAGGGGGGCAACCCCGTTCCTCACTGAGGGGCGGTGGAAACGGACACAGGTGGTGCATG 569 Query 170 GTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTA 229 | ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 570 GCTGTCGTCAGCTCGTGTCGTGAGATGTTAGGTTAAGTCCTGCAACGAGCGCAACCCTTG 629 Query 230 AGCTTAGTTGCCATCATTAAGTTGGGCACT---CTAAGTTGACTGCCGGTGACAAACCGG 286 |||||| || ||| | | | | ||| ||||||||||||||| |||| Sbjct 630 TCTTTAGTT---ATGATTCCCTCGAGGAAGAAACTAGAGAGACTGCCGGTGACAAGCCGG 686 Query 287 AGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCT 346 ||||||||| ||| |||||||| ||| ||||||||||| | ||||||||||||||||| Sbjct 687 AGGAAGGTGAGGATGACGTCAAGTCAGCATGCCCCTTACGCCCTGGGCTACACACGTGCT 746 Query 347 ACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTT 406 ||||||| | |||||||| || | | |||||| |||| || |||| ||| | | Sbjct 747 ACAATGGCCGGGACAAAGGGATGCAACCCTGCGAGGGGAAGCCAACCCCAAAAACCCGGT 806 Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 |||||||||||||| || |||||||||| || |||||| ||||||||||||||||| Sbjct 807 CTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATCGCC 866 Query 467 GATCAG-CATGCTACGGTGAATACGTTCCCG 496 | |||| ||| | ||||||||||||||||| Sbjct 867 GGTCAGCCATACGGCGGTGAATACGTTCCCG 897 >seq3514 Length=921 Score = 187 bits (206), Expect = 7e-45 Identities = 174/220 (79%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 268 ACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGA 327 |||||| |||| | || ||||||||||| ||| |||||||| || ||||| |||||||| Sbjct 717 ACTGCCTGTGATATACAGGAGGAAGGTGAGGATGACGTCAAGTCGTCATGACCCTTATGG 658 Query 328 TTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAG 387 ||||||||||||||| |||||||| | ||||| || ||| | ||||| || Sbjct 657 GCTGGGCTACACACGTGTTACAATGGCAACCACAAAAGGAAGCAATGGTGCGAGCCGGAG 598 Query 388 CAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCT 447 | ||||| | ||||||| || ||||||||||| |||||||||||| |||||| | Sbjct 597 CGAATCCTAAAAAGTTGCCCT-AGTTCGGATTGCTCTCTGCAACTCGAGAGCATGAAGTT 539 Query 448 GGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 |||||| ||||||||||| |||||||| || ||||||||| Sbjct 538 GGAATCACTAGTAATCGTGGATCAGCACGCCACGGTGAAT 499 Score = 86.0 bits (94), Expect = 2e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||| | ||||||| ||||||||||||||||||| ||||||| ||||| ||| ||| Sbjct 909 ACAGGCGTTGCATGGCTGTCGTCAGCTCGTGTCGTAAGATGTTTGGTTAGTTCCTTTAAC 850 Query 216 GAGCGCAACCCT 227 |||||||||||| Sbjct 849 GAGCGCAACCCT 838 >seq2853 Length=425 Score = 114 bits (126), Expect = 4e-23 Identities = 88/103 (85%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 6 CCGCAAGGTTGAAACTCAAAGGAATT-GACGGGGACCCGCACAAGCGGTGGAGCATGTGG 64 |||||||| | ||||||||||||| | ||||||| | | ||||| |||||| ||||||| Sbjct 135 CCGCAAGGCTAAAACTCAAAGGAAATAGACGGGGGCTCATACAAGTGGTGGAACATGTGG 76 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 ||||||||||| ||||||| |||||||||||| |||||||| Sbjct 75 TTTAATTCGAAACAACGCGCAGAACCTTACCAGCCCTTGACAT 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503645191360