Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08-
05] 23,591 sequences; 11,754,406 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq2758 170 4e-40
seq5796 116 7e-24
>seq2758
Length=1065
Score = 170 bits (188), Expect = 4e-40
Identities = 149/184 (81%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 155 AAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTG 214
|||| |||||||||| | ||||| | ||||||| |||| ||||| || || | ||||
Sbjct 57 AAAG-GTAACGGAGGTGTGCAAAGGTTCCCTCAGGCTGGACGGAAATCAGCCGTAGAGTG 115
Query 215 CAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGC 274
||||||| ||||| | |||||||| | ||| |||||| ||||||| |||||| ||| |
Sbjct 116 TAAAGGCATAAGGGAGCTTGACTGCAAGACCTACAAGTCGAGCAGGGGCGAAAGCCGGCC 175
Query 275 TTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGG 334
||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| || |
Sbjct 176 TTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAG 235
Query 335 GGAT 338
||||
Sbjct 236 GGAT 239
>seq5796
Length=591
Score = 116 bits (128), Expect = 7e-24
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185
||| ||||| | ||||||| | || | | ||| |||| || | ||| | ||| || ||
Sbjct 207 GGGTAGTTTCATTGGGGCGATGGCTTTCAAAAAAGTATCGAAAGCGTGCGAAGGTAGGCT 266
Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245
|| ||| |||||||| | | || |||| || | ||| || ||||||| | |||
Sbjct 267 CAAACTGGTCGGAAACCAGTGGAAGAGCGCAATGGTATAAGCCTGCCTGACTGCAAGACC 326
Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305
|| ||| |||||||||||||||||| | || ||| |||| | ||| ||||| |||
Sbjct 327 AACACGTCGAGCAGGGACGAAAGTCGGCCATAGTGACCCGGGAGCACTGTGTGGAATGGC 386
Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||||| |||||| |||| ||| || ||||||
Sbjct 387 TCTCGCTCAACGGATCAAAGGTACGCTAGGGATA 420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982168242016
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |