Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq7245 203 7e-50 seq4408 190 4e-46 >seq7245 Length=759 Score = 203 bits (224), Expect = 7e-50 Identities = 251/336 (75%), Gaps = 17/336 (5%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || | ||||| | | | |||||||||||| || ||||||||||||||| Sbjct 639 TTTACAACCCACGGGCCTTCATCCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 582 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 581 TTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 522 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||| |||||||||||||| ||| |||| | |||||||| ||| || || ||| Sbjct 521 GTGGCTGATTGTCCTCTCAGACCAGCTACTGATCATTGCCTTGGTAGGCCTTTGCCCCAC 462 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| | || ||| | | ||| || | | | ||| Sbjct 461 CAACTAGCTAATCAGACGCAAGCCCAT-------CCCTAGG--CGGTGATTAAC-CATTT 412 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA-- 299 | | | | | | |||| ||||||| | |||||||| | ||| ||| || ||| Sbjct 411 CACTCCTCAG-CCTATGAGGTATTAACAACCGTTTCCAGTTGGTAT--CCCTCTCCCAGG 355 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || ||| || || ||||||||||||||||| || Sbjct 354 GGTAGGTTCTTACGCGTTACTCACCCGTCCGCCACT 319 >seq4408 Length=1083 Score = 190 bits (210), Expect = 4e-46 Identities = 152/182 (84%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| || |||||||||| ||||||||||||||||||| ||||| |||||||||| | Sbjct 146 CACGCGGTAT-GGCTGGATCAAGCTTTCGCCCATTGTCCAAGATTCCTCACTGCTGCCGC 204 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || | | |||||| |||||||||||| |||||||| | ||||||||||||||||| | Sbjct 205 TCGAAAGCGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCATCCTCTCAGACCGACT 264 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 | ||||| | | |||||||||| ||| ||||||||||| ||||||| || |||||| Sbjct 265 AAGGATCTTTGGCTTGGTGAGCTTTTAACTCACCAACTACCTAATCCTACGAGAGCTCAT 324 Query 209 CT 210 || Sbjct 325 CT 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071747104480