Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq501 273 8e-71 seq2899 127 7e-27 seq169 100 1e-18 >seq501 Length=1514 Score = 273 bits (302), Expect = 8e-71 Identities = 345/468 (74%), Gaps = 17/468 (4%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | |||| ||||||| ||||| Sbjct 1216 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCCGAGTTCGATTGGCATTTCA 1157 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| |||||| ||||||| | |||||||| | || |||||| | ||||| || Sbjct 1156 CCCCTAACCACAGCTCATCCCACGATTTTTCAACATCGATGAGTTCGGACTTCCACTTGG 1097 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | |||||| |||||| |||| |||||| |||||||| | |||||||| | | | Sbjct 1096 TGTTACCCAAGCTTCATCCTGGCCATGGTTAGATCACCCGGGTTCGGGTCCATAAGGAGT 1037 Query 316 CACTCAT--ACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-CCCACACGGGTTAACC 372 || || |||||| || |||| ||||||||| |||| | | || |||||| Sbjct 1036 GACCTATTATCGCCCTGTTAAGACTTGCTTTCGCTTTGGCTTCGAAGAAACTCCTTAACC 977 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACC 432 || || | | || |||| |||||||||||| | |||||||| |||| || | Sbjct 976 CTGCCAC-CCCCTATAAGTCGCCGGCTCATTCTTCCACAGGCACGCGGTCA---GG--GC 923 Query 433 TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC 492 ||| | | |||| || | |||| | | ||||||| | |||||||||||| Sbjct 922 TAA-------TACCCCTCCCACTGCTTGTCAGATTACGGTTTCATGCGCTATTTCACTCC 870 Query 493 CCGCCAGGGGTACT-TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGG 551 || ||||||| || |||||||||||||||||||||||| | | |||||||||||| ||| Sbjct 869 CCTTCAGGGGTTCTCTTTCACCTTTCCCTCACGGTACTTCTTCACTATCGGTCACCCAGG 810 Query 552 AGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||| |||| |||||||| | |||||||||| ||||| Sbjct 809 AGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGGTTTCA 762 >seq2899 Length=673 Score = 127 bits (140), Expect = 7e-27 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 |||| |||||||||| ||||| || ||||||||||| | |||| ||||||| |||| Sbjct 401 ACGCCCCACCTAAATGGGTTTCGCAGAAAACCAGCTATCTCCGAGTTCGATTGGCTTTTC 460 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| ||||| |||||||| | || | || | ||||||||||||||| Sbjct 461 ACCCCTAGCCACAAGTCATCCCTGCCTATTGCCACAGACACGGGTTCGGTCCTCCAGAAA 520 Query 255 GTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT 304 || |||||| | |||||||||| ||||| |||||||| | ||||||| Sbjct 521 GTGTTACCCCCCTTTCAACCTGCTCATGGCTAGATCACCCGGTTTCGGGT 570 >seq169 Length=799 Score = 100 bits (110), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 5/135 (4%) Strand=Plus/Minus Query 446 AGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTAC 505 |||| | || | ||||| ||| ||||| || || ||||||||||| || ||||| | Sbjct 737 AGCTTCAACTGCTTGTAAGCATTGGGTTTTAGTATCTCTTTCACTCCCCACCTGGGGTGC 678 Query 506 T-TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTAT--TTAGGC 562 | |||| |||||||||||||||||| || | |||||||||| || || || |||||| Sbjct 677 TGTTTCTCCTTTCCCTCACGGTACTAGTTCACTATCGGTCA--GAGCAGCATGATTAGGC 620 Query 563 TTAACGGGTGGTCCC 577 ||| |||||||||| Sbjct 619 TTAGAGGGTGGTCCC 605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817171209984