Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq501 178 3e-42 seq169 136 1e-29 >seq501 Length=1514 Score = 178 bits (196), Expect = 3e-42 Identities = 303/420 (72%), Gaps = 22/420 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || | | ||||||||| | |||||| | |||| || || ||| Sbjct 1149 CCACAGCTCATCCCACGA--TTTTTCAACATCGATGAGTTCGGACTTCCACTTGGT-GTT 1093 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| |||| || |||||| ||||| || |||||| || || Sbjct 1092 ACCCAAGCTT-CATCCTGGCCAT-GGTTAGATCACCCGGGTT-CGGGTCCATAAGG-AGT 1037 Query 129 GAC---TAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT---ATTCGGTTAA 182 ||| | |||||| ||||||| ||||| |||| | || | | || |||| Sbjct 1036 GACCTATTATCGCCCTGTTAAGACTTGCTTT-CGCTTTGGCTTCGAAGAAACTCC-TTAA 979 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | | ||||| ||||||||| | | |||| | | | ||| |||| |||| | Sbjct 978 CCCT-GCCACCCCCTATAAGTCGCCGGCTCATTCTTCCACAGGCACGCGGTCAGGG--CT 922 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 || |||||||||||||| | |||||||||| | ||||||||||||||| || | Sbjct 921 AATACCCCTCCCACTGCTTGTCAGATTACGGTTTCATGCGCTATTTCACTCCCCT-TCAG 863 Query 303 GGGTTCT-TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 ||||||| |||| |||||||||||||||||| |||||||||||||| ||| ||||||| Sbjct 862 GGGTTCTCTTTCACCTTTCCCTCACGGTACTTCTTCACTATCGGTCACCCAGGAGTATTT 803 Query 362 AGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||| |||| |||||| | | ||||| || ||||| |||| || | ||||||| Sbjct 802 AGCCTTACGAGG-TGGTCCTCGCTGATTCACACGGGGTTTCACGTGTCCCATGCTACTCG 744 >seq169 Length=799 Score = 136 bits (150), Expect = 1e-29 Identities = 120/145 (83%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 ||| | |||||||||| |||| ||||| || |||| ||||||||||| | | ||||| | Sbjct 736 GCTTCAACTGCTTGTAAGCATTGGGTTTTAGTATCTCTTTCACTCCCCAC-CTGGGGTGC 678 Query 309 T-TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT--TTAGCC 365 | |||| ||||||||||||||||||||||||||||||||||| || || || |||| | Sbjct 677 TGTTTCTCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAG--AGCAGCATGATTAGGC 620 Query 366 TTGGAGGATGGTCCCCCCATATTCA 390 || |||| ||||||||| || |||| Sbjct 619 TTAGAGGGTGGTCCCCCTATCTTCA 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241307094144