Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq7245 192 1e-46 seq4408 174 3e-41 >seq7245 Length=759 Score = 192 bits (212), Expect = 1e-46 Identities = 228/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || || |||||||||||||||||| Sbjct 608 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 549 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | | |||||||| || ||||| ||| Sbjct 548 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATTGTCCTCTCAGACCAGCTACTGAT 489 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | | | |||||| ||| || | ||||||||| |||||| | ||| |||||||| | Sbjct 488 CATTGCCTTGGTAGGCCTTTGCCCCACCAACTAGCTAATCAGACGCAAGCCCATCCCTAG 429 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| | | | || || | | ||||| | | |||| ||||||| | | Sbjct 428 GCGGTGATT---------AACCAT--TTCACTCCTCAGCC--TATGAGGTATTAACAACC 382 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| | ||| || ||| | || ||||| || ||| ||||||||||||||||| Sbjct 381 GTTTCCAGTTGGTATCCCTCTCCCAGGGGTAGGTT-CTTACGCGTTACTCACCCGTCCGC 323 Query 301 CACTAAG 307 ||||||| Sbjct 322 CACTAAG 316 >seq4408 Length=1083 Score = 174 bits (192), Expect = 3e-41 Identities = 141/171 (82%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| |||||||| ||| || || |||||||||| | || | | |||| Sbjct 157 GCTGGATCAAGCTTTCGCCCATTGTCCAAGATTCCTCACTGCTGCCGCTCGAAAGCGTCT 216 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||||| ||| |||||||| ||| ||| |||| | || Sbjct 217 GGGCCGTGTCTCAGTCCCAGTGTGGCCGATCATCCTCTCAGACCGACTAAGGATCTTTGG 276 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTT 177 ||||||| ||| ||| |||||||||||||||||| || |||| |||||| Sbjct 277 CTTGGTGAGCTTTTAACTCACCAACTACCTAATCCTACGAGAGCTCATCTT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998164467456