Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq3514 120 3e-25 seq1716 118 9e-25 >seq3514 Length=921 Score = 120 bits (132), Expect = 3e-25 Identities = 124/161 (77%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| ||||||| |||| | | ||||| | ||||| ||||| ||||| Sbjct 551 TCGAGTTGCAGAGAGCAATCCGAACTAGGGCA-ACTTTTTAGGATTCGCTCCGGCTCGCA 609 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || || | ||| | |||||||| ||||||| ||||| |||||||||| || Sbjct 610 CCATTGCTTCCTTTTGTGGTTGCCATTGTAACACGTGTGTAGCCCAGCCCATAAGGGTCA 669 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||||||||||| || | |||| Sbjct 670 TGACGACTTGACGTCATCCTCACCTTCCTCCTGTATATCAC 710 >seq1716 Length=1290 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||| |||| || ||| |||||||| | Sbjct 834 CGAGTTGCAGCCTGCAATCCGAACTGAGACCGGGTTTTTGGGGTTGGCTTCCCCTCGCAG 775 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || |||| ||| |||||||| ||||||| ||||| | |||||| ||| Sbjct 774 GGTTGCATCCCTTTGTCCCGGCCATTGTAGCACGTGTGTAGCCCAGGGCGTAAGGGGCAT 715 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| ||||||| Sbjct 714 GCTGACTTGACGTCATCCTCACCTTCCTCCGGCTTGTCAC 675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415904928270