Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq2758 102 6e-20 seq5796 87.8 1e-15 >seq2758 Length=1065 Score = 102 bits (112), Expect = 6e-20 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || |||||||||| | || | Sbjct 229 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGG 170 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||||||| |||||| | |||| | ||| ||| |||||| | ||| |||| || |||| | Sbjct 169 CTTTCGCCCCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTATGCCTTTACACTCT 110 Query 121 CACTAC-GATTTCCGACC 137 || | |||||||| || Sbjct 109 -ACGGCTGATTTCCGTCC 93 >seq5796 Length=591 Score = 87.8 bits (96), Expect = 1e-15 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||| ||||||||||||| ||| ||||| || || |||| |||||||| || Sbjct 409 TACCTTTGATCCGTTGAGCGAGAGCCATTCCACACAGTGCTCCCGGGTCACTATGGCCGA 350 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | ||||| ||| ||| ||| ||| ||| | ||||||| || | Sbjct 349 CTTTCGTCCCTGCTCGACGTGTTGGTCTTGCAGTCAGGCAGGCTTATACCATTGCGCTCT 290 Query 121 --CACTACGATTTCCGACC 137 |||| | ||||||||| Sbjct 289 TCCACT--GGTTTCCGACC 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351922149700