Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1177 145 1e-32 seq5796 123 4e-26 seq1180 123 4e-26 seq4408 82.4 1e-13 >seq1177 Length=1534 Score = 145 bits (160), Expect = 1e-32 Identities = 139/177 (79%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 7 GGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TAT 65 ||||||| ||||||||| |||||| |||||| |||| || ||||| |||||| | | Sbjct 713 GGGCTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCACACATAGCTACCCAGCGTGT 654 Query 66 GCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAG 125 | |||||||| | ||||||| ||||||||| ||||| ||| ||||||||||||||| | Sbjct 653 CCCCTTGGCAGGAGAACTGGTATACCAGAGGTGTGTCCTTCCAGGTCCTCTCGTACTATG 594 Query 126 GACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 || ||| ||| ||| || |||| || |||||| ||||||||||||||| || Sbjct 593 GAAGGCTTCTCGCAATGCTCTAGCGCCTACACCGGATATGGACCGAACTGTCTCACG 537 >seq5796 Length=591 Score = 123 bits (136), Expect = 4e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||| |||| ||| || || || |||||| ||| ||| || |||| || ||| Sbjct 586 GATAGGAACCGTACTGCCTCTCGGCGCACTAAACCCAACTCACGTACCGCTTTCATCGGC 527 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| |||||||||||||| |||||||||||||||| || ||| |||||||| Sbjct 526 GAACAGCCGAACCCTTGGGACCTTCTTCAGCCCCAGGATGCGATGAGTCGACATCG 471 >seq1180 Length=610 Score = 123 bits (136), Expect = 4e-26 Identities = 83/93 (89%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| | Sbjct 533 ACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGACGT 474 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| | |||||||| || || |||||||||||| Sbjct 473 ACTACCGCCCCAGGTTGCGATGAGCCGACATCG 441 >seq4408 Length=1083 Score = 82.4 bits (90), Expect = 1e-13 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 24 GCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACT 83 ||||||||| ||| | || |||| ||||| ||||||||||| |||| |||||| Sbjct 984 GCCTTCAGCAGTTACTCGATCTAAACGTAGCTACCCAGCTATGCTGCTGGCGCAACAACT 1043 Query 84 GGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 ||| ||||||||||| | ||||||||||||||||| Sbjct 1044 GGTAGACCAGAGGTTTACCATTCCCGGTCCTCTCGTAC 1081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780621557676