Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq7245 255 1e-65 seq4408 168 2e-39 >seq7245 Length=759 Score = 255 bits (282), Expect = 1e-65 Identities = 306/412 (74%), Gaps = 24/412 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| ||||||| || | |||||||||| ||| | |||||||| |||||||| Sbjct 639 TTTACAACCCACGGGCCTTCATCCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 580 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 579 GCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 520 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| | ||||||||||||||||| |||| | |||| ||| |||| || |||| ||| Sbjct 519 GGCTGATTGTCCTCTCAGACCAGCTACTGATCATTGCCTTGGTAGGCCTTTGCCCCACCA 460 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | ||||| ||| || | | || || Sbjct 459 ACTAGCTAATCAGACGCAAGCCCATCC-CTAG--------GCGGTGATTAACCATTTCAC 409 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | |||| ||||||| | |||||||||||| | |||||| |||| || | Sbjct 408 TCCTCAGCC--TATGAGGTATTAACAACCGTTTCCAGTTGGTATCCCTCTCCCAGGGGTA 351 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT--GCTTCC 362 | ||| | | |||||||||||||||||||| ||| | | ||| |||| Sbjct 350 GGTTCTTACGCGTTACTCACCCGTCCGCCACT--------AAGATGGAGGCTAACCTTCA 299 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | || |||||||||||||||||||| || || |||||||||||| ||||| Sbjct 298 TCTT--CGTTCGACTTGCATGTGTTAAGCATG-CGCCAGCGTTCATCCTGAG 250 >seq4408 Length=1083 Score = 168 bits (186), Expect = 2e-39 Identities = 154/193 (80%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| |||||| || ||||||| ||||||| |||| |||| ||||||| Sbjct 119 TTTACAACCCATTTAGCCTTCATCCCTCACGCGGTATGGCTGGATCAAGCTTTCGCCCAT 178 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||| ||||| |||||||||| | || | | |||||| |||||||||||| |||||| Sbjct 179 TGTCCAAGATTCCTCACTGCTGCCGCTCGAAAGCGTCTGGGCCGTGTCTCAGTCCCAGTG 238 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||| | ||||||||||||||| ||| ||||| | | || |||| || ||| | | || Sbjct 239 TGGCCGATCATCCTCTCAGACCGACTAAGGATCTTTGGCTTGGTGAGCTTTTAACTCACC 298 Query 184 AACTAGCTAATCC 196 ||||| ||||||| Sbjct 299 AACTACCTAATCC 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222111623616