Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq7245 217 4e-54 seq4408 181 3e-43 seq1716 104 7e-20 >seq7245 Length=759 Score = 217 bits (240), Expect = 4e-54 Identities = 200/252 (79%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| || || ||| ||||||||| | |||||||||| | | Sbjct 443 GCGTCTGATTAGCTAGTTGGTGGGGCAAAGGCCTACCAAGGCAATGATCAGTAGCTGGTC 502 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 503 TGAGAGGACAATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 562 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| ||||||||| | ||||| |||||||| |||||| Sbjct 563 AGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGATGAA 622 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGA 398 |||| |||| ||||| || | || | ||||| | |||||||| | |||| | Sbjct 623 GGCCCGTGGGTTGTAAACTCCTTTTCTTAGAGAAGAAGTTCTGACGGTATCTAAGGAATA 682 Query 399 AGCCCCGGCTAA 410 ||| ||||||| Sbjct 683 AGCATCGGCTAA 694 >seq4408 Length=1083 Score = 181 bits (200), Expect = 3e-43 Identities = 204/270 (76%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 144 CGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCG 203 ||||| | ||| | | ||| |||||| |||||||| || ||| ||| |||||| | Sbjct 333 CGGTAGAAGATGAGCTCTCGTAGGATTAGGTAGTTGGTGAGTTAAAAGCTCACCAAGCCA 274 Query 204 ACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAA 263 | |||| ||| || |||||||| |||||||||||| ||| |||||||||||| ||| | Sbjct 273 AAGATCCTTAGTCGGTCTGAGAGGATGATCGGCCACACTGGGACTGAGACACGGCCCAGA 214 Query 264 CTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAAC 323 | | | || | |||||||||| ||||| ||| ||||||||| ||||| |||| |||| | Sbjct 213 CGCTTTCGAGCGGCAGCAGTGAGGAATCTTGGACAATGGGCGAAAGCTTGATCCAGCCAT 154 Query 324 GCCGCGTGAGCGATGAAGGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGA 382 ||||||||| ||||||||| |||| ||||| ||||| ||| || |||| ||| Sbjct 153 ACCGCGTGAGGGATGAAGGCTAAATGGGTTGTAAACCTCTGACCTGAATCTAGATTGTGA 94 Query 383 C--GGTACTTGAGGAGGAAGCCCCGGCTAA 410 | ||| || ||| ||| ||||||||| Sbjct 93 CATGGT--TTCAGGGAAAAGTCCCGGCTAA 66 >seq1716 Length=1290 Score = 104 bits (114), Expect = 7e-20 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 409 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGG 468 |||| |||||||||||||||||||||||| ||| || ||||||||||||||| | | || Sbjct 1 AACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCGGAATCA-TTGG 59 Query 469 GCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||||||||| | ||||||||| |||||| Sbjct 60 GCGTAAAGGGTCCTGAGGTGGTTTGCTAAGTC 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497246701184