Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1716 313 6e-83 seq2853 141 2e-31 seq2765 75.2 3e-11 >seq1716 Length=1290 Score = 313 bits (346), Expect = 6e-83 Identities = 305/388 (79%), Gaps = 5/388 (1%) Strand=Plus/Plus Query 24 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGG 83 |||| |||||||||||||||||||||||| ||| || ||||||||||||||| | |||| Sbjct 1 AACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCGGAATCATTGGG 60 Query 84 CGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGG 143 |||||||||| | ||||||||| |||||| ||||||| | |||||||||| | Sbjct 61 CGTAAAGGGTCCTGAGGTGGTTTGCTAAGTCTACTGTGAAAGATCAGGGCTCAACCCTGA 120 Query 144 GACTGCTTTTGAAACTG-CAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTA 202 | ||| | ||||||| |||| |||| | | | ||||||| | |||||||| ||||| Sbjct 121 AAATGCGGTGGAAACTGGCAGGCTTAGAATACGGTAGGGGCAGGGGGAATTCCCGGTGTA 180 Query 203 GCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGT 262 |||||||||||| ||||||| ||| |||||||| ||||||||| | |||||| | | Sbjct 181 GCGGTGAAATGCATAGATATCGGGAAGAACACCAAAGGCGAAGGCACCCTGCTGGGCCGA 240 Query 263 AACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 322 | ||||||||| ||||||| ||||||||||| ||||||||||||| |||||||| Sbjct 241 TATTGACACTGACAGACGAAAGCTAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCT 300 Query 323 CGCCGTAAACGATGAATACTAGGTGTCGGGGCG--CATAAGTGCTCCGGTGCCGCAGCAA 380 |||||||||| || |||||| ||| | | || || || | | | |||| ||||| | Sbjct 301 AGCCGTAAACGGTGGATACTAAGTG-CTGAACGACCAAAAACG-TGCAGTGCTGCAGCTA 358 Query 381 ACGCAATAAGTATTCCACCTGGGGAGTA 408 |||| ||||||| || ||||||||||| Sbjct 359 ACGCGCTAAGTATCCCGCCTGGGGAGTA 386 >seq2853 Length=425 Score = 141 bits (156), Expect = 2e-31 Identities = 138/176 (78%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 164 GGCTAGAGT--GCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATA 221 ||||||||| || |||||| |||||||||||| | |||| |||||||| ||||||| Sbjct 413 GGCTAGAGTAAGCTAGAGGGG--AGTGGAATTCCTGGAGTAGGGGTGAAATCTGTAGATA 356 Query 222 TTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGA 281 |||||||| || |||||||| || |||| |||||||| |||||| ||| Sbjct 355 CCAGGAGGAAGGCCGAATGCGAAGGCATCTCCCTGGGGCTTAACTGACGCTGAGGTGCGA 296 Query 282 AAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||| | |||| ||||||||| ||||| |||||||||||| | ||| |||| Sbjct 295 AAGCGTGGGTATCAAAGAGGATTAGAGACCCTTGTAGTCCACGCCCTCAACCATGA 240 >seq2765 Length=227 Score = 75.2 bits (82), Expect = 3e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 42 GCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGG 100 ||||||||||| |||||| |||||||| |||||||||||||||||||||| ||||| Sbjct 1 GCGGTAATACGGGGGGGGCAAGCGTTATTCGGAATTACTGGGCGTAAAGGGCATGTAGG 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202916153088