Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq501 206 9e-51 seq2899 123 8e-26 >seq501 Length=1514 Score = 206 bits (228), Expect = 9e-51 Identities = 346/493 (70%), Gaps = 22/493 (4%) Strand=Plus/Plus Query 4 AGTCCGAACAGGGCGACA----GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||| |||||||||| | ||| || | | |||||||| || |||||||| ||| Sbjct 1012 AGTCTTAACAGGGCGATAATAGGTCACTCCTTATGGACCCGAACCCGGGTGATCTAACCA 1071 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||||||||| | |||||||| |||| |||||||| || ||||||||||| Sbjct 1072 TGGCCAGGATGAAGCTTGGGTAACACCAAGTGGAAGTCCGAACTCATCGATGTTGAAAAA 1131 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||||||||||| ||||||||||| || || | |||| ||| ||||||||||| Sbjct 1132 TCGTGGGATGAGCTGTGGTTAGGGGTGAAATGCCAATCGAACTCGGAGCTAGCTGGTTCT 1191 Query 180 CTCCGAAAACTATTTAG--GTAGTGCCTCAAGTATCACCATC-----GGGGGTAGAGCAC 232 | |||||| || || | || | | | | || | | |||||| ||||| Sbjct 1192 CCCCGAAATGCGTTGAGGCGCAGCGGTTGACGAGCCATGAGCTGTCTAGGGGTAAAGCAC 1251 Query 233 TGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC---GCA 289 || ||| | | ||| | | | ||||||| | | ||||||| |||| | ||| Sbjct 1252 TG-TATCGGTGCGGGCTGCGAGAGCGGTACCAAATCGTAGCAAACTAAGAATACTAGGCA 1310 Query 290 TCAGTTTTACCG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAG 347 | || || ||| |||||| |||| | |||| ||| | | ||||| || Sbjct 1311 T--GTCTTTCCGTCAACCAGTGAGACAGTGGGGGATAAGCTCCATTGTCAAGAGGGAAAC 1368 Query 348 AATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGAT 407 | || || | ||||||||||||| ||||| ||||||| || || || || || Sbjct 1369 AGCCCAGATCACCAGCTAAGGCCCCTGAATGATCGCTAAGTGGAA--AAGGAGGTGAGAA 1426 Query 408 TGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAG 467 ||| | ||||| || | ||| |||| |||||||||| || |||||||||||||||| || Sbjct 1427 TGCCGAAACAGCCAGAAGGTTTGCTTAGAAGCAGCCA-TCCTTTAAAGAGTGCGTAATAG 1485 Query 468 CTCACTAGTCGAG 480 |||||| || ||| Sbjct 1486 CTCACTGGTGGAG 1498 >seq2899 Length=673 Score = 123 bits (136), Expect = 8e-26 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGG 95 |||||||||| |||||||| ||||| |||| |||| | | |||||||| ||||||| Sbjct 570 ACCCGAAACCGGGTGATCTAGCCATGAGCAGGTTGAAAGGGGGGTAACACTTTCTGGAGG 511 Query 96 TCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAA 155 |||||||| ||| | || | ||||||| ||||| ||||||||||| || || Sbjct 510 ACCGAACCCGTGTCTGTGGCAATAGGCAGGGATGACTTGTGGCTAGGGGTGAAAAGCCAA 451 Query 156 ACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTA 211 | |||| ||| |||||||||| ||| ||||| | |||||||| | || | || || Sbjct 450 TCGAACTCGGAGATAGCTGGTTTTCTGCGAAACCCATTTAGGTGGGGCGTAAAATA 395 Score = 84.2 bits (92), Expect = 7e-14 Identities = 119/165 (72%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 316 TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAA 375 ||||||| ||||||| |||||||| || | || || | ||||||| | | || Sbjct 234 TGGGTGCAAAGGTCCAAAGCCGAGAGGGAAATAGCCCAGATCGTACGCTAAGGTCTCCAA 175 Query 376 ATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGG 435 |||| |||||| | || ||||| | || |||||| | |||| || ||||||| Sbjct 174 GAGACAACTAAGTGGGA--AAGGAAGTTTCTGGGCAAAGACAACCAGGAGGTGGGCTTGG 117 Query 436 AAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||||||| || ||| |||| |||||| |||||||| ||| || Sbjct 116 AAGCAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689201406464