Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq501 127 4e-27 seq169 82.4 1e-13 >seq501 Length=1514 Score = 127 bits (140), Expect = 4e-27 Identities = 176/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||| | | | ||| | ||| || | Sbjct 177 GGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTGGAAACCAACGAAATGCTCCGAG 236 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| | ||||| |||||||||| ||||| |||||| ||| |||| | | | Sbjct 237 GAGCTGG-AAACAAGCTTTGATCCGGAGATTCCCGAATAGGGCAACC------TCTAGAA 289 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| | ||||| ||||| || | | || ||| ||| ||| |||||||||| ||| Sbjct 290 C--TGCCTATTGAATTCATAGATAGGAGAGAGACAACCCGGTGAATTGAAACATCTTAGT 347 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | ||||||||||| ||| | ||||||| ||||| ||||||||||||||||| || Sbjct 348 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCTGAGTAGCGGCGAGCGAAATGGGATCAG 407 Query 249 CCT 251 ||| Sbjct 408 CCT 410 >seq169 Length=799 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 ||| |||||||||| ||||||| |||||||||||||||||||||| || |||||||| Sbjct 148 GAATTGAAACATCTTAGTAGCTAGAGGAAAAGAAATCAACCGAGATCCCGTCAGTAGTGG 207 Query 231 CGAGCGAA 238 ||||||| Sbjct 208 TGAGCGAA 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918183340256