Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq174 682 0.0 >seq174 Length=1763 Score = 682 bits (756), Expect = 0.0 Identities = 478/536 (89%), Gaps = 10/536 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 998 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 939 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 938 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 879 Query 127 GGCCCG-CGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCATT 184 | ||| | || ||| |||||||| || || || || | |||| ||| Sbjct 878 GCGCCGACCGAGCGTCTTGGAGCCAGAAAGAGG--GGCAGAGCCCCGCTTCCAACCCATG 821 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 ||| ||||||| || || ||| |||||||||||||||| |||||||| ||||||||| Sbjct 820 GAT-AAGTAAATAA-CGTTAAAGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACT 766 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 TATTCTACACCCCTTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 706 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 705 TCTTTCCCCGCTGTTTCTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 646 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 645 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 586 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 526 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTT 540 ||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| Sbjct 525 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAGCATC-CTTT 471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634814239968