Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq7245 154 3e-35 seq4408 141 2e-31 >seq7245 Length=759 Score = 154 bits (170), Expect = 3e-35 Identities = 171/227 (75%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 69 TTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGC 128 || ||| || | ||||| ||||||||| || | |||||||||| ||||| | | || Sbjct 659 TTCTTCTCTAAGAAAAGGAGTTTACAACCCACGGG-CCTTCATCCTCCACGCGGCATTGC 601 Query 129 TGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 | |||| || ||| |||||| || |||||||||||||||||||||||||||| ||| Sbjct 600 TCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGG 541 Query 189 ACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCT 248 |||||||||||| ||| ||||| || |||||||||| | ||| ||| | | || Sbjct 540 GCCGTGTCTCAGTCCCAGTGTGGCTGATTGTCCTCTCAGACCAGCTACTGATCATTGCCT 481 Query 249 AGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| |||| || |||| || |||| ||||| ||||| |||||| Sbjct 480 TGGTAGGCCTTTGCCCCACCAACTAGCTAATCAGACGCAAGCCCATC 434 >seq4408 Length=1083 Score = 141 bits (156), Expect = 2e-31 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 84 AGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCG 143 ||| |||||||| || | | ||||||||| |||||| ||||||| ||| || ||| Sbjct 114 AGAGGTTTACAACCCATTTAGCCTTCATCCCTCACGCGGTATGGCTGGATCAAGCTTTCG 173 Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203 |||||| |||| |||||||||||||||| | || | | || ||| |||||||||||| | Sbjct 174 CCCATTGTCCAAGATTCCTCACTGCTGCCGCTCGAAAGCGTCTGGGCCGTGTCTCAGTCC 233 Query 204 CAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263 || ||||| || | |||||||||| | ||| ||| | |||| |||| || ||| | Sbjct 234 CAGTGTGGCCGATCATCCTCTCAGACCGACTAAGGATCTTTGGCTTGGTGAGCTTTTAAC 293 Query 264 CCGCCTACTACCTAAT 279 | || |||||||||| Sbjct 294 TCACCAACTACCTAAT 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068547859392