Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq8081 367 4e-99 >seq8081 Length=493 Score = 367 bits (406), Expect = 4e-99 Identities = 284/331 (86%), Gaps = 5/331 (2%) Strand=Plus/Plus Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||| |||| || | |||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1 GTAAGCCAATACCTTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCG 60 Query 238 GCTCA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGT 296 || | |||||||||||||||| |||||| |||| ||||| | | ||| || Sbjct 61 GCACTGAGGCCATGCGATTCGTGGAGTTATCATGATTCACCGCGTTTCGGGCAAGCCCGG 120 Query 297 T-GGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 | || ||||||||||||||||| ||||||| |||||| ||| ||| ||| ||||||| Sbjct 121 TCGGCCTTTTATCTAATAAATACGTCCCTTCCAGAAGTC-GGGATTTCCGCACGTATTAG 179 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| |||||||||||| ||||||||||| |||||||||| Sbjct 180 CTCTAGAATTACTACGGTTATCCGAGTAGTAAGGTACCATCAAATAAACTATAACTGATT 239 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||| Sbjct 240 TAATGAGCCATTCGCAGTTTCACAGTATAAAGCAGTTTATACTTAGACATGCATGGCTTA 299 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| Sbjct 300 ATCTTTGAGACAAGCATATGACTACTGGCAG 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510043681536