Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1947 351 1e-91 seq3161 340 2e-88 seq12 208 8e-49 seq213 132 5e-26 seq2164 116 4e-21 seq4603 89.7 6e-13 seq53 87.8 2e-12 >seq1947 Length=534 Score = 351 bits (388), Expect = 1e-91 Identities = 389/519 (75%), Gaps = 0/519 (0%) Strand=Plus/Minus Query 161989 TTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACG 162048 ||||| || || || || ||| | ||| | || ||| | ||||| |||||||| ||||| Sbjct 520 TTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGACA 461 Query 162049 CTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCT 162108 ||||| || ||||||||||||||||| || || | || || | ||| | || | ||| Sbjct 460 CTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGCA 401 Query 162109 ATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTC 162168 ||||| || | || ||||| |||||||| | ||||||| || ||||| || ||| Sbjct 400 ATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATTC 341 Query 162169 AAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTC 162228 || || | |||| || | || ||||| ||||| ||||| ||||| ||||||||| Sbjct 340 CGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTTC 281 Query 162229 TGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTC 162288 |||||||||||||| || | || || ||| |||||||||||||| ||||| ||||| Sbjct 280 TGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCTT 221 Query 162289 TTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAAT 162348 || ||||| || | ||||| |||| ||| |||| ||| | | || || || || || Sbjct 220 TTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAAC 161 Query 162349 CTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAA 162408 | |||||||| ||||| || ||||| |||||||| ||||| || || |||||||| ||| Sbjct 160 TTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGAA 101 Query 162409 ACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTT 162468 ||||||||||| || || ||| | ||||| |||||| |||| |||||| |||| | Sbjct 100 ACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCAA 41 Query 162469 GATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTT 162507 || || || || || || |||||||||||||||| ||| Sbjct 40 GACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq3161 Length=578 Score = 340 bits (376), Expect = 2e-88 Identities = 313/396 (79%), Gaps = 0/396 (0%) Strand=Plus/Minus Query 160385 TTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACT 160444 ||||| || ||||| || || |||| ||||| ||| || | || || || || | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 160445 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCA 160504 || || ||| ||||||||||||||||||||| ||||| ||||||||||| || || Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 160505 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCT 160564 ||||| || ||||| |||||| | ||||||||||| || || || |||||||| || ||| Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 160565 CTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTT 160624 || ||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||| | Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 160625 TCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAA 160684 ||||||||||||||||| || || |||||||||||||||||||| | | ||| ||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 160685 GGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTC 160744 || | || | |||||||||| ||| | | ||||| ||| || || |||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 160745 ATGCACGAGCGTAACGCTCACAACTTCCCTCTCGAC 160780 ||||||||||||||||||||||||||||| || ||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq12 Length=429 Score = 208 bits (230), Expect = 8e-49 Identities = 302/420 (72%), Gaps = 6/420 (1%) Strand=Plus/Minus Query 161550 TTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGG 161609 ||| || || ||||| |||||||| | || ||||| || ||||||||||| | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 161610 CGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTC 161669 || ||| |||| || || ||||||| || ||||| || || || | || ||||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 161670 CTATCTTGAGGGT-GCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGG 161728 || || || ||| |||| || | | ||||| ||||| |||||||| || |||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCT-TAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGG 251 Query 161729 GTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCC 161788 | ||||| | || | || ||||| || ||||||||||| || ||| | ||| || Sbjct 250 GGCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCC 191 Query 161789 AACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCA 161848 || | || || || |||| ||||| || || || || ||||||||||| ||||| |||| Sbjct 190 AATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCA 131 Query 161849 TGCTTCGTCAGTTTGAACTTGCTCG-TCT-TATCGGTATCCGTCCTTACAATGCTATTGC 161906 |||| ||||||||||| ||||| || ||| || | | |||||||||||||||||||| Sbjct 130 TGCTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAG--CTTCGTCCTTACAATGCTATTGC 73 Query 161907 TTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTC 161966 ||||| | || || || || || || || || | || |||||||| ||||| || Sbjct 72 ATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATC 13 >seq213 Length=407 Score = 132 bits (146), Expect = 5e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 160166 GGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTA 160225 ||||||||||| |||||| ||| || |||||||| ||||| || |||||| |||||||| Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 160226 TTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCT 160285 ||| || ||||||| ||||||| ||||| ||||| || | |||||| || || || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 160286 GGTACTTTTAACT 160298 |||||||| |||| Sbjct 96 GGTACTTTCAACT 84 >seq2164 Length=396 Score = 116 bits (128), Expect = 4e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 160031 TTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTC 160090 || || || ||||||||||| || || || ||||| ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 160091 CAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAA 160150 ||||| | || | ||||||| | | ||||||| ||| |||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 160151 CTCTCTTACCGT 160162 || |||| |||| Sbjct 213 CTTTCTTTCCGT 224 >seq4603 Length=650 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 160305 TTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTG 160364 |||| |||||||| || ||||| ||||||||||| || ||||||||||| |||||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 160365 GGGTATTCGGTGGATCTCTGTT 160386 | || || ||||| || || || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 159934 CGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTCTGG 159993 ||| || ||||||||||| || ||||||| || | ||||| ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 159994 TGCAGTTGTTCCCTCTTCCAA 160014 |||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551213406109800