Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3161 363 2e-95 seq1947 354 1e-92 seq12 232 8e-56 seq2164 134 2e-26 seq4603 98.7 1e-15 seq1029 93.3 5e-14 seq213 89.7 7e-13 >seq3161 Length=578 Score = 363 bits (402), Expect = 2e-95 Identities = 324/406 (80%), Gaps = 0/406 (0%) Strand=Plus/Minus Query 189433 TTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACC 189492 ||||| |||||||| |||||| | || || || || || | |||||||| ||||| | | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 189493 GAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCT 189552 || || ||| |||||||||||| || |||||||||||||| |||||||| |||||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 189553 GCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCA 189612 || || || || || |||||||| ||||||||||| || || ||||||||||| ||||| Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 189613 CTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTC 189672 |||||||||||||| ||||| ||||| || || ||||||||||| || || || || || Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 189673 AGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAA 189732 ||||||||||||||||| || || ||||||||||| || || | |||| |||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 189733 GGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTC 189792 |||||||| | ||||| |||| ||| | ||||||||||| || ||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 189793 ATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGCAG 189838 ||||| ||||||||||||||||||||||| || || ||||| ||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAG 171 >seq1947 Length=534 Score = 354 bits (392), Expect = 1e-92 Identities = 390/519 (75%), Gaps = 0/519 (0%) Strand=Plus/Minus Query 190460 CTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGAC 190519 ||| |||||||| || |||||||| ||| |||||||||| || || ||||| |||||||| Sbjct 521 CTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGAC 462 Query 190520 GCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGC 190579 || ||||| ||||||||||||||||| || || | | |||| ||||| || | || Sbjct 461 ACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGC 402 Query 190580 AATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTT 190639 ||| ||||| | || || ||||| || ||| ||||||||| || |||||||| || Sbjct 401 AATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATT 342 Query 190640 TAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTT 190699 || ||| | |||| || | ||||||||||| || ||||| ||||| |||||||| Sbjct 341 CCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTT 282 Query 190700 CTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 190759 |||||| || |||||||| || || ||| ||| ||| | |||||||| ||||| ||||| Sbjct 281 CTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCT 222 Query 190760 CTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAA 190819 |||||||| || | ||||| |||| | | || ||| | | || || || || || Sbjct 221 TTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAA 162 Query 190820 CCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGA 190879 | | |||||||||||||| || || |||||||| | ||||||||||| || || ||||| Sbjct 161 CTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGA 102 Query 190880 GACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGT 190939 || || ||||||||||| || | ||||| |||||| |||| ||||| |||| || Sbjct 101 AACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCA 42 Query 190940 TGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGT 190978 || || || || || || ||||||| || || || || Sbjct 41 AGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 232 bits (256), Expect = 8e-56 Identities = 311/432 (72%), Gaps = 8/432 (2%) Strand=Plus/Minus Query 190023 TTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGT 190082 ||||| || || ||||||||||| || || ||||| || |||||||| || | ||| Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 190083 GGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGT 190142 |||||| |||| || || || || | ||| |||||||| ||||| | |||||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 190143 TACCTTGAGGGTGCTAATTTTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGT 190202 ||||| || ||| || || | ||||| || |||||||| || || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 190203 CATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAA 190262 ||||| | || | || ||||| || || ||||||| || ||| | ||| |||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 190263 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATG 190322 | || || || ||| | ||||| || || || || ||||||||||||||||| |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 190323 CTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCTTACAATGCTATTGC 190378 || ||||||||||| || ||||| || ||| | |||||||||||||||||||| Sbjct 128 CTGCGTCAGTTTGAGCTTGCACG----CTCTGTAAAGCTTCGTCCTTACAATGCTATTGC 73 Query 190379 GTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATC 190438 ||||| | || ||||| || || ||| || || | ||||| ||||| || ||||| Sbjct 72 ATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATC 13 Query 190439 GAGTTGGTTCTT 190450 ||||||| || Sbjct 12 AGGTTGGTTTTT 1 >seq2164 Length=396 Score = 134 bits (148), Expect = 2e-26 Identities = 109/132 (83%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 189079 TTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTC 189138 || ||||| || |||||||| || ||||| || || ||||| |||||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 189139 CAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAA 189198 ||||| | || | ||||||| || | ||||||| | |||||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 189199 CTCTCTTACCGT 189210 || |||| |||| Sbjct 213 CTTTCTTTCCGT 224 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 189353 TTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAG 189412 |||| |||||||| |||||||||||||| |||||||| ||||||||||| || || || | Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 189413 GTGTCTTCGGTGGTTCACTGTT 189434 |||| || ||||||||||| || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq1029 Length=1000 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| |||||||| || ||| | ||||| || || | |||||||| ||||| || Sbjct 649 TTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 590 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| ||| | ||||||| |||| ||||| | || ||||| ||||| || Sbjct 589 ATGATCCCTACTCTTTTGACTGCAACT-TCTGTATTCATTATTGCATTTGTTGCTGCTCC 531 Query 188970 CCCTGTAGACATT 188982 |||||||||||| Sbjct 530 TCCTGTAGACATT 518 >seq213 Length=407 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 189214 GGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTC 189273 |||||||||||||||||| | |||||||||||||| |||||||| || | || || Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 189274 TTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGT 189333 || | |||| || | ||||||||||| ||||| |||| ||||| | || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 189334 GGAACCTTCAACTACAT 189350 || || ||||||| ||| Sbjct 96 GGTACTTTCAACTTCAT 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633893017734000