Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq3161 407 2e-108 seq1947 390 1e-103 seq12 223 4e-53 seq2164 141 1e-28 seq213 122 1e-22 seq53 96.9 4e-15 seq4603 95.1 1e-14 seq1029 87.8 2e-12 >seq3161 Length=578 Score = 407 bits (450), Expect = 2e-108 Identities = 327/395 (83%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 161154 TTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAAC 161213 ||||| |||||||| |||||| |||| ||||| || || | |||||||| ||||||||| Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 161214 GAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCT 161273 || || ||| |||||||||||| |||||||||||||| || |||||||| || ||| Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 161274 GCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCG 161333 || || |||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 161334 TTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTC 161393 | ||||||||||| || ||||||||||| || ||||||||||||||||| |||||| || Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 161394 TCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAG 161453 || ||||||||||||||||| ||||| ||||||||||||||||| | | || ||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 161454 GGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTA 161513 || || | ||||| |||| |||| | | || ||||||||||| |||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 161514 ATGCACGAGCGTAATGCTCACAACTTCCCTCTGGA 161548 |||||||||||||| |||||||||||||| || || Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGA 182 >seq1947 Length=534 Score = 390 bits (432), Expect = 1e-103 Identities = 398/519 (77%), Gaps = 0/519 (0%) Strand=Plus/Minus Query 164361 TTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACA 164420 ||||| || || || |||||| | ||| || | ||| ||||||| ||||| ||||||||| Sbjct 520 TTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGACA 461 Query 164421 CTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCT 164480 || ||||| ||||| ||||||||||| || ||| | | || | ||| ||||| ||||| Sbjct 460 CTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGCA 401 Query 164481 ATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTC 164540 |||||||| || || || ||||| || ||||||||||||| || |||| || ||| Sbjct 400 ATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATTC 341 Query 164541 AAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTC 164600 || ||| | |||||||| | |||||||| ||||| ||||| ||||| ||||| ||| Sbjct 340 CGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTTC 281 Query 164601 TGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTC 164660 ||||| ||||| ||||| | || ||| || |||||||||||||||||||| ||||| Sbjct 280 TGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCTT 221 Query 164661 TTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAAT 164720 |||||||| || | || ||||||| ||| |||||||| || | || || || || || Sbjct 220 TTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAAC 161 Query 164721 CTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAG 164780 | ||||||||||| || || ||||| |||||| | |||||||| || |||||||| || Sbjct 160 TTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGAA 101 Query 164781 ACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTA 164840 || ||||| || || |||||| | | || ||||| | || || |||||||| | | Sbjct 100 ACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCAA 41 Query 164841 GACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTT 164879 ||||||||||||||| ||||||| || ||||| ||| Sbjct 40 GACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 223 bits (246), Expect = 4e-53 Identities = 306/428 (71%), Gaps = 0/428 (0%) Strand=Plus/Minus Query 163923 TTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGT 163982 ||||| || || ||||||||||| || || ||||| || ||||||||||| | ||| Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 163983 GGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGT 164042 |||||| |||| || || || || || || ||||||||| ||||| | || | Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 164043 TACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGT 164102 ||||| || ||| || ||| | ||||| || |||||||| || || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 164103 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAA 164162 ||||| | || | || ||||| || ||| |||| || ||||||| | ||||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 164163 CTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATG 164222 | || || || ||| | ||||| || | || || |||||||||| || || |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 164223 CTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTC 164282 || || |||||||| ||||||| |||| | ||||| |||||||||||||| ||| Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGCTTCGTCCTTACAATGCTATTGCATTC 69 Query 164283 TCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGT 164342 || | || || || || || || || ||| | || || ||||| || ||||| || Sbjct 68 TCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCAGGT 9 Query 164343 TGGTTCTT 164350 ||||| || Sbjct 8 TGGTTTTT 1 >seq2164 Length=396 Score = 141 bits (156), Expect = 1e-28 Identities = 110/131 (84%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 160800 TTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTAC 160859 || ||||| |||||||||||||| || || || |||||||| ||||| |||||||||||| Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 160860 CAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAA 160919 ||||| |||| | |||||| | | ||||||| ||||||||||||||| ||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 160920 CTTTCCTACCG 160930 ||||| | ||| Sbjct 213 CTTTCTTTCCG 223 >seq213 Length=407 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 160935 GGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTA 160994 || ||||| || |||||| || || || |||||||| ||||| ||||| | ||| ||| Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 160995 TTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCT 161054 ||| || |||| || ||||||||||||| ||||| || |||||||| || || || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 161055 GGTACCTTCAACTTCAT 161071 ||||| ||||||||||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq53 Length=414 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 160703 CGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGG 160762 |||||||||||||||||| || ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 160763 TGCAGTTGTTCCTTCTTCCAA 160783 ||||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 >seq4603 Length=650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 161074 TTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTG 161133 |||| ||||| || || ||||||||||| |||||||| ||||||||| | |||||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 161134 GTGTCTTCGGTGGTTCTCTGTT 161155 |||| || |||||||| || || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq1029 Length=1000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 ||||| || ||||| || || | || || |||||| | |||||||| ||||| || Sbjct 649 TTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 590 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTT-ATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| ||||| ||| | ||||| |||| || |||| ||| || ||||||||||| Sbjct 589 ATGATCCCTACTCTTTTGACTGCAACT-TCTGTATTCATTATTGCATTTGTTGCTGCTCC 531 Query 160691 CCCCGTGGACAT 160702 || || ||||| Sbjct 530 TCCTGTAGACAT 519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559163061164400