Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq90 206 5e-51 seq24 159 7e-37 >seq90 Length=1616 Score = 206 bits (228), Expect = 5e-51 Identities = 249/333 (75%), Gaps = 7/333 (2%) Strand=Plus/Minus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||||||| |||||| || |||||||||| ||||||||| Sbjct 480 CCCGACGAGGGGAGTGAAATAGAACCTGAAATCGGAAGCCTACAAGCAGTCGGAGCCACC 421 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | ||||||||||| ||||||| |||||| | | ||| || | || | || || Sbjct 420 TCGCGTGGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTCAT-GTGCCGTGCAAG 362 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGA-GTT 182 ||||| || ||| ||| || || ||||||||| || || ||||||| | || Sbjct 361 CTTAAGCCGTT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGAATAAGTA 306 Query 183 GGTGGCGCTA-GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAAC 241 || || | ||| ||||||| |||||||| ||| ||||||||||||| | |||||| Sbjct 305 CGTCGCATGACGACCCGAAACCAGGTGATCTATCCATGAGCAGGTTGAAGGCTGGGTAAC 246 Query 242 GCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGG 301 | | |||||||||||||| || || |||||||| || | |||||||| | || ||||| Sbjct 245 ACCAGCTGGAGGACCGAACCCGTGAATGTTGAAAAATTCTGGGATGACTTGTGGATAGGG 186 Query 302 GTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||| ||| |||||| || Sbjct 185 GTGAAAGGCCAATCAAACCTGGACATAGCTGGT 153 >seq24 Length=14409 Score = 159 bits (176), Expect = 7e-37 Identities = 239/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| |||||||| | || |||||| | Sbjct 6147 CCCGACGAGGGGAGTGAAACAGTTCCTGAAACCGGATGCCTACAAACAGTAGGAGCCCAA 6206 Query 64 TGAT-----TCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | | | |||||| |||| ||||||| |||||| | | ||| ||||| | || | Sbjct 6207 GGTTCGTCCTGGGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTAGTT-TAACGA 6265 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178 || || ||||| | ||| ||| || || ||||||||| || || |||||| | Sbjct 6266 GCAAGCTTAAGCCGAT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGTCA 6321 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 |||| || | ||||| |||||| |||||||| ||| || |||| ||||| ||||| Sbjct 6322 AGTTCGTTGAATTAGACCCGAAACGAGGTGATCTAGCCATGACCAGGCTGAAGGTGCGGT 6381 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| || || ||| ||||||| |||||||| |||||| | | || || Sbjct 6382 AACACGCACTGAAGGGCCGAACCCACGTCTGTTGAAAAAGCCGGGGATGAGTTGTGGCTA 6441 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||| ||||||||| || Sbjct 6442 GGGGTGAAAGGCCAATCAAACCTCGAAATAGCTGGT 6477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972642163200