Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq24 163 4e-38 seq5444 132 7e-29 >seq24 Length=14409 Score = 163 bits (180), Expect = 4e-38 Identities = 189/249 (76%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||| | | ||||||| Sbjct 7407 CTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGG-CTTCGCAG 7349 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| ||| || ||| ||| || || | || Sbjct 7348 AGCCCTGTGTTTTTGCTAAACAGTCGCCACCCCCTGGTCTGTGCC----CCTCC-GATC- 7295 Query 121 ACACGTCGTTCACC-AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 || ||| || | | | | | ||||||||||||||||||| | || |||||||| Sbjct 7294 ---CG--GTTGCCCGAACCGAAGGCCTCCTTCTCCCGAAGTTACGGAGGCAATTTGCCGA 7240 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 |||||| | |||||||| | | |||||||| |||| ||||||| | ||||||||||||| Sbjct 7239 GTTCCTTCAGCACAGTTCGCTCAAACGCCTTGGTATACTCTACCAGTCCACCTGTGTCGG 7180 Query 240 TTTACGGTA 248 ||| |||| Sbjct 7179 TTTCGGGTA 7171 >seq5444 Length=4073 Score = 132 bits (146), Expect = 7e-29 Identities = 175/243 (72%), Gaps = 15/243 (6%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || ||| || | ||||| | ||| || |||| Sbjct 3482 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGGAGACC 3540 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||| || | |||| ||||| || || Sbjct 3541 TGTGTTTTTGATAAACAGTTGCCAGAACCGATTCCCTGCGGCCCT-------TC------ 3587 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || ||| | ||| |||||||||||||||||||||||||| |||||||| ||||| Sbjct 3588 -CTTTTTACAGAAAGGGCGCCCCTTCTCCCGAAGTTACGGGGCCAGTTTGCCGAGTTCCT 3646 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | ||||| | || | ||| ||||||||||||| | ||||||||||||||| | Sbjct 3647 TAGAGAGAGTTCTCTCGCGCCCCTCAGTATTCTCTACCAACCTACCTGTGTCGGTTTATG 3706 Query 246 GTA 248 ||| Sbjct 3707 GTA 3709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694290854425