Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq24 329 8e-88 seq5444 221 3e-55 seq6395 89.7 1e-15 >seq24 Length=14409 Score = 329 bits (364), Expect = 8e-88 Identities = 320/409 (78%), Gaps = 27/409 (7%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||||||||| || | ||||||||||| | ||||| Sbjct 7579 GCATCTTCACGGGGAATTCAATTTCACTGAGCCTGTGCTGGAGACAGCGGGGAAGTCGTT 7520 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7519 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 7460 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||||||||||||||| || |||||| || ||||| | Sbjct 7459 TAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCGGAGCTT-GC--------ACCCCTCC 7409 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||||||||||||||||||||||||||| |||||||||||| ||| || || |||| Sbjct 7408 TCTTAACCTTCCGGCACCGGGCAGGCGTCAGACCCTATACGTCGCCTTGCGGCTTCGCAG 7349 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| ||||||||||| | ||||| ||| | || || Sbjct 7348 AGCCCTGTGTTTTTGCTAAACAGTCGCCACCCCCTGG--TCTGTGCCC--------CT-- 7301 Query 313 CGGAGCAAGTCCTTCACCCTCACCG--GCGCACCTTCTCCCGAAGTTACGGTGCCTTTTT 370 | || | | | ||| |||| | | ||||||||||||||||||| | | ||| Sbjct 7300 CCGATC----CGGTTGCCCGAACCGAAGGCCTCCTTCTCCCGAAGTTACGGAGGCAATTT 7245 Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||| ||||||||| | ||||| ||||| ||||||||||| ||||||| Sbjct 7244 GCCGAGTTCCTTCAGCACAGTTCGCTCAAACGCCTTGGTATACTCTACC 7196 >seq5444 Length=4073 Score = 221 bits (244), Expect = 3e-55 Identities = 299/414 (72%), Gaps = 22/414 (5%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | || ||||||| ||||||| ||||||||| ||| || Sbjct 3295 GCATCTTCACGGACAAGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGTTCTGATCATT 3354 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||| || | Sbjct 3355 ACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGACTGTCA 3414 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA-GCTAACCCCAT 191 | ||||| ||||||||| |||||||||||| || ||||||| | |||||| | Sbjct 3415 TAGTTACAGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCGAAAAACTCTAACCAACT 3474 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 || |||||||||||| |||||||||||| ||| ||| | ||| || ||||| Sbjct 3475 TCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTACGACTTTGCG 3534 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT-GAGCT 310 ||| |||||||||| ||||||||| || || | || || || | | | Sbjct 3535 GAGACCTGTGTTTTTGATAAACAGTTGCCAGAACCGATTCCCTGCGGCC--CTTCCTTTT 3592 Query 311 TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTT 370 ||| || ||| ||||| ||||||||||||||||||| ||| ||| Sbjct 3593 TAC--AGAAAG---------------GGCGCCCCTTCTCCCGAAGTTACGGGGCCAGTTT 3635 Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACC 424 ||| |||||||| |||||||||| || ||| |||||||||| |||||| Sbjct 3636 GCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTCAGTATTCTCTA-CCAACC 3688 >seq6395 Length=39126 Score = 89.7 bits (98), Expect = 1e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||||||| ||| ||||| | ||| |||||||||||||||||||||||| ||| ||| Sbjct 11120 ACGCCATTCATGCGGGTCGACAATTATTCGACAAGGAATTTCGCTACCTTAGAACCCTTA 11179 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTC 161 |||| ||| ||||||||| || |||| Sbjct 11180 GAGTTAGGGCTGCCGTTTACTGGTCCTTC 11208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260595435200