Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq24 517 3e-144 seq14742 325 1e-86 >seq24 Length=14409 Score = 517 bits (572), Expect = 3e-144 Identities = 416/497 (84%), Gaps = 4/497 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 3810 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 3869 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| |||||||||||| |||||||||| || | | Sbjct 3870 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCCTTTGACATCCTGTGCTGCATG 3929 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||||| | | ||||| ||||||| || || |||||||| ||||||| ||||||||| Sbjct 3930 GAGAGATCCATGGTTCCC-TTCGGGG-ACGCAGAGACAGGTGCTGCATGGCTGTCGTCAG 3987 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 3988 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCCCTAGTTGC 4047 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGGGGA 299 || |||| |||||||||||||| | |||||||||||| || ||| |||||||||||||| Sbjct 4048 CAGCATTCAGTTGGGCACTCTAGGGGGACTGCCGGTGATAAGCCGCGAGGAAGGTGGGGA 4107 Query 300 CGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATA 359 |||||||| || ||||| |||||| | |||||||||||||||||||||||| | Sbjct 4108 TGACGTCAAGTCCTCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGCGGTGA 4167 Query 360 CAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATT 419 ||| ||||||||| | |||| | ||| ||||||| |||| | |||||||||||||| Sbjct 4168 CAATGGGCAGCGAGCCTGCGAAGGTGAGCTAATCCCAAAAAGCCG-TCTCAGTTCGGATT 4226 Query 420 GTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTA 479 | | |||||||||||| | |||||| ||||||||||||||||| | ||||||| Sbjct 4227 GCACTCTGCAACTCGAGTGCATGAAGTCGGAATCGCTAGTAATCGCGCAACAGCATGGCG 4286 Query 480 CGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 4287 CGGTGAATACGTTCCCG 4303 >seq14742 Length=52551 Score = 325 bits (360), Expect = 1e-86 Identities = 386/521 (74%), Gaps = 44/521 (8%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 3120 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCAGTGGATTATGTGGTT 3061 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| | || ||||||||||||||| ||||||| | || | |||||||| Sbjct 3060 TAATTCGATGATACACGAAGAACCTTACCAGGGATTGACATGCCAAGAACTTTCTAGAGA 3001 Query 127 TAGA--GGT--------------TTCCCCTT-CGG--GGGACA------GAG--TG---A 156 |||| ||| | | ||| | | |||| ||| || | Sbjct 3000 TAGATTGGTGCCTTTTGCGTTCTTGCTGCTTGCAGTAGGGATGTATTTGGAGCTTGGACA 2941 Query 157 CAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216 |||||| ||||||| ||||||||||||||| |||||| ||| | |||||||| |||| Sbjct 2940 CAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTGAGGTGTAGAGTTAAGTCTTCTAACG 2881 Query 217 AGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGT 276 |||||||||||| |||||| || | |||||| |||||||||| Sbjct 2880 AGCGCAACCCTTGTCTTTAGTTAAAATAA------------CTCTAAAGAGACTGCCGGT 2833 Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336 | || ||||||||||| | ||| |||||||| ||| ||||||||||| ||||||| Sbjct 2832 GT-AAGCCGGAGGAAGGAGAGGATGACGTCAAGTCAGCATGCCCCTTACATCCTGGGCTA 2774 Query 337 CACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCA 396 ||||||| |||||||| || |||| || |||||| |||||||| ||||||||||| Sbjct 2773 CACACGTAATACAATGGCTAAGACAACAGGAAGCGAACCCGCGAGGGGAAGCAAATCCCC 2714 Query 397 TAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456 ||| || ||||||||||||||||| |||||||||| || ||||||| ||||| ||| Sbjct 2713 CAAACTTAGCCTCAGTTCGGATTGTAGGCTGCAACTCGCCTGCATGAAGCCGGAATTGCT 2654 Query 457 AGTAATCGTAGATCAGC-ATGCTACGGTGAATACGTTCCCG 496 |||||||| ||||| || |||||||||||||| || Sbjct 2653 AGTAATCGCCAGTCAGCTATATGGCGGTGAATACGTTCTCG 2613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503755976000