Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq5444 188 1e-45 seq24 185 2e-44 >seq5444 Length=4073 Score = 188 bits (208), Expect = 1e-45 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| ||||||||| ||||||||| ||||| ||| ||||| ||||||| Sbjct 3106 GACAGTTTCAGGTGGGCAGTTTCTCTGGGGCGGAGGCCTCATAAAAGGTAACTGAGGCGC 3047 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| | ||||||| |||| ||||| || | |||| ||||||||||||| | | Sbjct 3046 GCAAAGGTCCCCTCAGTCTGGACGGAAATCAGACATTGAGTGTAAAGGCAAAAGGGGGCT 2987 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 ||||||| | ||| |||||| |||||| |||||| || |||| ||||||| |||| | Sbjct 2986 TGACTGCAAGACCTACAAGTCGAGCAGGAGCGAAAGCTGGCCTTAGTGATCCGACGGTAC 2927 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| ||||||||||| ||| ||||||| ||| || |||||| Sbjct 2926 CGAGTGGAAGGGCCGTCGCTCAACGAATAAAAGTTACTCTAGGGATA 2880 >seq24 Length=14409 Score = 185 bits (204), Expect = 2e-44 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 7765 CGGGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 7824 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 ||| | ||| || ||||| || ||||| | | || ||||||| |||| ||| | Sbjct 7825 CGCGCGAAGGTAGGCTCAGAACGGTCGGAAATCGTTCGGCGAGTGCAATGGCATAAGCCT 7884 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||||||||| || || ||| ||||| | |||||| ||| | || |||||||| || Sbjct 7885 GCCTGACTGCGAGACTGACACGTCGAGCAGAGTCGAAAGACGGCCATAGTGATCCGGTGG 7944 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | ||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 7945 TCCCTCGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 7994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982240605600