Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq24 297 4e-78 seq3385 275 1e-71 seq14742 241 3e-61 seq13206 228 2e-57 >seq24 Length=14409 Score = 297 bits (328), Expect = 4e-78 Identities = 270/337 (80%), Gaps = 20/337 (6%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 3378 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 3321 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 3320 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 3261 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || Sbjct 3260 TGTGGCTGGTCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTAGGCCATTACCCCA 3201 Query 181 CCAACTAGCTAATCCGACCTAGGCTCAT-CTGATAGCGCAAGGCCCGA-AGGTCCCCTGC 238 |||||||||||||||||| ||||||| || | |||| | | | Sbjct 3200 CCAACTAGCTAATCCGACGCGGGCTCATCCTTCT----------CCGATAAAT------C 3157 Query 239 TTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 298 ||||||||| ||||||||| |||||||||| |||| ||||| || | Sbjct 3156 TTTCTCCCGGAGGACGTATACGGTATTAGCACAAATTTCTCTGTGTTATTCCGTAGAGAA 3097 Query 299 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || ||||||| | || ||||||||||||| |||||| Sbjct 3096 GGGTAGATTCCCACGCGTTACTCACCCGTCTGCCGCT 3060 >seq3385 Length=505 Score = 275 bits (304), Expect = 1e-71 Identities = 188/209 (90%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||||| ||||||||||||||||||| Sbjct 257 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCATTG-CTGGATCAGGCTTTCGCCC 314 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| Sbjct 315 ATTGTCCAATATTCCCCACTGCTGCCACCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 374 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| || |||||||||||||||| ||||||||| || Sbjct 375 TGTGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCATTACCCCA 434 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATC 209 ||||||||||||||| || ||| |||| Sbjct 435 CCAACTAGCTAATCCAACGCGGGCCCATC 463 >seq14742 Length=52551 Score = 241 bits (266), Expect = 3e-61 Identities = 259/337 (77%), Gaps = 18/337 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| ||| |||||||| ||| ||||||| |||| || ||||||||||||||| Sbjct 3554 CTTTACAGTCCACGAACCTTCTT-CACTCACGCGGTATTG-CTCCATCAGGCTTTCGCCC 3611 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| || ||||||||||||||||| |||||| ||||||| |||||||||||| |||| Sbjct 3612 ATTGTGGAAAATTCCCCACTGCTGCCTTCCGTAGAAGTCTGGGCCGTGTCTCAGTCCCAG 3671 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| |||||||||||||| |||||||||| | Sbjct 3672 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGGAAGCCATTACCCCC 3731 Query 181 CCAACTAGCTAATCCGAC-CTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTC-CCCTGC 238 |||||||||||||| ||| | || ||| ||| | || || || | || Sbjct 3732 CCAACTAGCTAATCAGACGCAAGCCTC-TCTCTTGGC-----------AGTTCTCACT-- 3777 Query 239 TTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 298 |||| | | | | |||| ||||||||| | |||||| |||||||||| | | Sbjct 3778 TTTCGCTCCTCAGCATTATGGGGTATTAGCAGCAGTTTCCCGCTGTTATCCCCCGCCAAA 3837 Query 299 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||| | ||| || | |||||||||||| |||| || Sbjct 3838 AGGTAAGTTCTTACGTGTTACTCACCCGTACGCCACT 3874 >seq13206 Length=631 Score = 228 bits (252), Expect = 2e-57 Identities = 145/155 (94%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| |||||||||||||||| |||||||||| |||| ||| Sbjct 479 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTTCCCCC 536 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 537 ATTGTCCAATATTCCCCACTGCAGCCACCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 596 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 |||| ||||||||||||||||||||| |||||||| Sbjct 597 TGTGGCTGATCATCCTCTCAGACCAGCTACGGATC 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071826068000