Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq90 374 3e-101 seq24 363 6e-98 seq14742 246 1e-62 seq6395 77.0 1e-11 >seq90 Length=1616 Score = 374 bits (414), Expect = 3e-101 Identities = 420/552 (76%), Gaps = 20/552 (4%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTT-GATTTCGGTA-AGCTTGTGGGCCCCCTAGACCATCCAGTGC 110 || ||||||||||||| | || || |||| |||| ||| ||| | ||||||||||| Sbjct 42 GGTATTCGGAGTTTGGCTAGAATT-GGTACAGCTCGTGCCGCCCGCAT-CCATCCAGTGC 99 Query 111 TCTACCTCCGGGAAGAA-ACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGC 169 |||||| || | ||| ||| | ||||| |||||||| |||||| ||||||||||| Sbjct 100 TCTACC-CCCCAAGGAATACATCCAACGCTCTACCTAAATAGATTTCGCGGAGAACCAGC 158 Query 170 TATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC 229 ||| | | ||||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct 159 TATGTCCAGGTTTGATTGGCCTTTCACCCCTATCCACAAGTCATCCCAGAATTTTTCAAC 218 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 | ||||||||||||||| ||| |||||| ||||||||||| ||||||||||| Sbjct 219 ATTCACGGGTTCGGTCCTCCAGCTGGTGTTACCCAGCCTTCAACCTGCTCATGGATAGAT 278 Query 290 CACTTCGCTTCGGGTCTTGAT-CGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 ||| | | |||||||| | || || ||| || |||||||||| |||||||||||||| Sbjct 279 CACCTGGTTTCGGGTCGTCATGCGACGTACTTATTCGCCCTATTCAGACTCGCTTTCGCT 338 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 || |||| || |||| |||| || || || || || |||| | | |||| | || Sbjct 339 GCGCCTACACCTAACGGCTTAAGCTTGC-ACGGCACATGAAGTCGCTGACCCATTATACA 397 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| ||||||||||| | || |||||||| | |||||||| Sbjct 398 AAAGGTACGCCGTCACC-----------ACGCGAGGTGGCTCCGACTGCTTGTAGGCTTC 446 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 | |||||||| |||||||||||||| | ||||| ||||||||||||||||||||||| Sbjct 447 CGATTTCAGGTTCTATTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTA 506 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 ||||| | |||||||||| | |||||||||||||| |||||||||| ||| |||| Sbjct 507 CTTGTTCACTATCGGTCATGTACGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTTCA 566 Query 588 CACGAAATTTCA 599 || |||||| Sbjct 567 GACAGGATTTCA 578 >seq24 Length=14409 Score = 363 bits (402), Expect = 6e-98 Identities = 417/556 (75%), Gaps = 10/556 (2%) Strand=Plus/Minus Query 46 ACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATC 104 ||| || || |||||||||||||||| |||||||| ||| || |||||| | ||||| Sbjct 6596 ACTCCCTGGTATTCGGAGTTTGGTTGGGATCGGTAAGACTGTAGGTCCCCCTTGCCCATC 6537 Query 105 CAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAA 164 |||||||||||| || || | | ||||||| |||||||| |||||| |||||| Sbjct 6536 CAGTGCTCTACCCCCAGGGGTATAAGTTCGACGCTCTACCTAAATAGATTTCGCGGAGAA 6477 Query 165 CCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTT 224 |||||||| ||| ||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 6476 CCAGCTATTTCGAGGTTTGATTGGCCTTTCACCCCTAGCCACAACTCATCCCCGGCTTTT 6417 Query 225 TCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGA 284 ||||| | |||||||||| ||| || || ||||| ||||| |||| ||||| Sbjct 6416 TCAACAGACGTGGGTTCGGCCCTTCAGTGCGTGTTACCGCACCTTCAGCCTGGTCATGGC 6357 Query 285 TAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTT 344 |||||||| ||| ||||||||| || ||| ||||||||||| |||||||||| Sbjct 6356 TAGATCACCTCGTTTCGGGTCTAATTCAACGAACT-TGACGCCCTATTCAGACTCGCTTT 6298 Query 345 CGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTC 404 |||| || |||| || ||| |||| || || | | | || |||| | | |||| Sbjct 6297 CGCTGCGCCTACACCTATCGGCTTAAGCTTGC-TCGTTAAACTAAGTCGCTGACCCATTA 6239 Query 405 TTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGG 464 | ||||||| |||| |||||| | || | ||| ||||| || | ||||||| Sbjct 6238 TACAAAAGGTACGCAGTCACCCAGGAC------GAACCTTGGGCTCCTACTGTTTGTAGG 6185 Query 465 CACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCAC 523 || ||||||||| ||| ||||||||||| | ||||| ||||||||||||||||||| Sbjct 6184 CATCCGGTTTCAGGAACTGTTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCAC 6125 Query 524 GGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGA 583 |||||| || | ||||||||| | ||||||| |||||||| |||||| ||| ||| Sbjct 6124 GGTACTGGTTCACTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGGTGGGCCCCCCATG 6065 Query 584 TTCACACGAAATTTCA 599 |||| || |||||| Sbjct 6064 TTCAGACAGGATTTCA 6049 >seq14742 Length=52551 Score = 246 bits (272), Expect = 1e-62 Identities = 343/474 (72%), Gaps = 24/474 (5%) Strand=Plus/Plus Query 133 CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTT 192 || |||||| ||| || |||||||||||||| ||||||| | | | || |||||| || Sbjct 699 CGCCGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCTGAATTCGATTGGAATT 758 Query 193 TCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACG 252 ||||| ||| ||||| ||||| ||| | |||||||| | |||| |||| ||||||||| Sbjct 759 TCACCGCTAATCACAGCTCATCTCCTGATTTTTCAACATCAGTGAGTTCAGTCCTCCACT 818 Query 253 CGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCG 312 | |||||| |||||||| || ||||| ||||||| | |||||||| | Sbjct 819 TAGCGTTACCCAAGCTTCAACTTGGCCATGATTAGATCATCCAGGTTCGGGTCCATAAGA 878 Query 313 TGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACG-----GGT 367 | ||| ||||||| ||| |||||||||||||| |||| || | | | Sbjct 879 AGTGACT-TGACGCCCTGTTCAGACTCGCTTTCGCTTGGGCT---CCGGAGGTTCTTCCT 934 Query 368 TAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCT 426 ||||| || |||| | | || |||| |||||||||||||| |||||||| ||| Sbjct 935 TAACCCTGC--CACATCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCTGTC---- 988 Query 427 GGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTT 486 | || || | | || |||| || | |||| || | ||||||| || || ||| Sbjct 989 ---AGATATAATGTA--TC--CTCCAACTGCTTGTCAGCTTACGGTTTCATGTTCTTTTT 1041 Query 487 CACTCCCCGCCAGGGGTACT-TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 |||||||| | ||||| || |||||||||||| || | |||||| | | |||||||||| Sbjct 1042 CACTCCCCTACGGGGGTTCTATTTCACCTTTCCATCGCTGTACTTCTTCACTATCGGTCA 1101 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||||||||| |||| |||||||| |||||||||||| ||| || Sbjct 1102 CTCAGGAGTATTTAGCCTTACGAGGTGGTCCTCGCAGATTCACACGGGATTCCA 1155 >seq6395 Length=39126 Score = 77.0 bits (84), Expect = 1e-11 Identities = 125/173 (72%), Gaps = 9/173 (5%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTAT-CACGAAGTTTGATTGGCCTTT 193 |||| |||||||||||| ||||| | || ||||||| |||| || |||||| |||||| Sbjct 19978 ACGCCGCACCTAAATGCGTTTCGCCAAAAATCAGCTATGCACG-AGCTTGATTAGCCTTT 20036 Query 194 CACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT---GGGTTCGGTCCTCC- 249 ||| |||| | || ||| | ||| | | || || ||| |||||||||| ||| Sbjct 20037 CACTCCTAGGCCCAAGTC-TTCCCAAACTATT--GCCACAGTTACGGGTTCGGTCTTCCT 20093 Query 250 ACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGG 302 | ||| ||| |||| |||||||||| || | ||| || || |||||| Sbjct 20094 AAGCGAACTTCTCCGCCTTTCAACCTGCTCAGGCCTAGGTCGCTCGTCTTCGG 20146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817305094400