Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq24 223 7e-56 seq3385 215 1e-53 seq14742 199 8e-49 seq13206 147 4e-33 >seq24 Length=14409 Score = 223 bits (246), Expect = 7e-56 Identities = 165/193 (85%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 3346 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 3287 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 3286 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTACGGAT 3227 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| |||| | ||||||||| |||||| | |||| || |||| ||| Sbjct 3226 CGTCGCCTTGGTAGGCCATTACCCCACCAACTAGCTAATCCGACGCGGGCTCATCCTTCT 3167 Query 181 GCGATAAATCTTT 193 |||||||||||| Sbjct 3166 CCGATAAATCTTT 3154 >seq3385 Length=505 Score = 215 bits (238), Expect = 1e-53 Identities = 166/197 (84%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| |||||| ||||||||||||| ||||||| Sbjct 289 GGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCACCCGTAG 348 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || |||| ||| Sbjct 349 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGAT 408 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| |||| | ||||||||| |||||| |||| ||||||| Sbjct 409 CGTCGCCTTGGTAGGCCATTACCCCACCAACTAGCTAATCCAACGCGGGCCCATCCAAAG 468 Query 181 GCGATAAATCTTTGGTC 197 ||||||||||||||||| Sbjct 469 GCGATAAATCTTTGGTC 485 >seq14742 Length=52551 Score = 199 bits (220), Expect = 8e-49 Identities = 226/299 (76%), Gaps = 17/299 (6%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||||| || || |||||||||||||| |||||| ||||| Sbjct 3592 GCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTTCCGTAGAAGTCT 3651 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||||| || ||||| |||||||| Sbjct 3652 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGC 3711 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GAT 185 ||||| || |||| | | ||||||| |||||| | ||| |||| ||| | || | | Sbjct 3712 CTTGGGAAGCCATTACCCCCCCAACTAGCTAATCAGACGCAAGCCTCTCTCTTGGCAGTT 3771 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 |||| || || ||||| | ||||||| ||||||||| ||||| Sbjct 3772 CTCACTTT--TC----------GC--TCCTCAG-CATTATGGGGTATTAGCAGCAGTTTC 3816 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | ||||| || | | ||||| | ||| || ||||||||||||||||| ||||||| Sbjct 3817 CCGCTGTTATCCCCCGCCAAAAGGTAAGTT-CTTACGTGTTACTCACCCGTACGCCACT 3874 >seq13206 Length=631 Score = 147 bits (162), Expect = 4e-33 Identities = 105/121 (87%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||||||||||||||||| |||||| ||||||||| ||| ||||||| Sbjct 511 GGCATTGCTGGATCAGGGTTTCCCCCATTGTCCAATATTCCCCACTGCAGCCACCCGTAG 570 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| |||||| | ||| |||||||| || ||||| ||| Sbjct 571 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACGGAT 630 Query 121 C 121 | Sbjct 631 C 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998238009600