Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq24 188 2e-45 seq14742 183 7e-44 >seq24 Length=14409 Score = 188 bits (208), Expect = 2e-45 Identities = 292/411 (71%), Gaps = 16/411 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||||| |||| | ||||| | ||| || Sbjct 7050 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTGACCCTGCGCAGATTAGCTTTACG 6991 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC-CCGTCACACGCTACTCATGCCT 119 | |||||||||||| |||||| | | || ||| || | | || |||||||| | Sbjct 6990 CAGGAACCCTTGGACTTTCGGCGAGGGTGTCTCTCACACCCTTTCTCGTTACTCATGTCA 6931 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACC-CGGCAGCTTCACCA-CTGACAC 177 ||||||||||| | | |||||| | | |||| | || ||||||| | || Sbjct 6930 GCATTCTCACTTCCGATACCTCCACGGCGCC-TCACGGCTGCCGCTTCACAGGCCTACGG 6872 Query 178 GACGCTCCCCTACCCA---ACCACACAGGTTGCCAC----AGCTTCGGCGGATAACTTAA 230 ||||||| ||||| | | | ||| | ||| |||||||| | | ||| | Sbjct 6871 AACGCTCCGCTACCGCGTGATCCCTAAGGATCACACCCGCAGCTTCGGTGCACGGCTTGA 6812 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTG-----ACCAGTGAGCTATTACGCACTCT 285 |||||| |||||| || |||| | | |||| ||||||||||| |||||| ||| Sbjct 6811 GCCCCGTTACATTGTCCGCGCAAGAACCCTTGTTTAGACCAGTGAGCTGTTACGCTTTCT 6752 Query 286 TTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC 345 || || |||||||||||| |||||||| |||||||||| | | | |||||| |||| Sbjct 6751 TTAAATGATGGCTGCTTCTAAGCCAACATCCTGGTTGTTTTGGGATTCTCACATCGTTTC 6692 Query 346 CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 |||| || | |||| ||| ||||||||| | || ||| ||||||||| Sbjct 6691 ACACTTAGCCGTGACTTGGGGACCTTAGCTGGCGGTCAGGGTTGTTTCCCT 6641 >seq14742 Length=52551 Score = 183 bits (202), Expect = 7e-44 Identities = 159/195 (82%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| ||||||||| | |||| ||| || |||| ||||||| | | ||| |||| Sbjct 373 CCATAGCTTCGGCAGGCTGCTTAGTCCCGGC--CATTGTCGGCGCAAGAACGCTTTACCA 430 Query 267 GTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||| | Sbjct 431 GTGAGCTATTACGCACTCTTTCAAGGAATAGCTGCTTCTAAGCGAACCTCCTGGTTGTTT 490 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| |||||||||| ||||| || ||| ||||||||||||||||||| ||||| Sbjct 491 CAGCATTCTCACATCCTTTTCCACTTAGCAGCCATTTAGGGGCCTTAGCTGATGGTCTGG 550 Query 386 GCTGTTTCCCTCTCG 400 ||||||||||||||| Sbjct 551 GCTGTTTCCCTCTCG 565 Score = 73.4 bits (80), Expect = 9e-11 Identities = 139/198 (70%), Gaps = 14/198 (7%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||| |||||||||||||||| || ||||||||| | ||| ||| | Sbjct 127 CGACTACGCCGCTCGGCCTCGCCTTAGGTCCTGACTCACCCCCCACGGACGAACCTTGTA 186 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGT-CACACGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 187 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 246 Query 120 GCATTCTCACT--CGCA---TCAACTCCACCACACAGTCACCCGGCAGCTTCA-CCACTG 173 |||||||||| ||| || |||| | | || |||| ||||||| |||||| Sbjct 247 ACATTCTCACTTCTGCACTGTCCACTCAAACTTAC-GTCA-----AAGCTTCACCCACTG 300 Query 174 ACACGACGCTCCCCTACC 191 || ||||||||||||| Sbjct 301 -CAGAACGCTCCCCTACC 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177408934400