Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq24 147 2e-33 seq5444 96.9 3e-18 >seq24 Length=14409 Score = 147 bits (162), Expect = 2e-33 Identities = 126/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | ||||||||||||||||| || |||||| ||| Sbjct 7971 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGGCCGTCTTTCGACTCTG 7912 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||||| || ||||||||||||||||| || ||||| || Sbjct 7911 CTCGACGTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCGCCGAACGATTTC 7852 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | ||| ||||||| || ||||||||| Sbjct 7851 CGACCGTTCTGAGCCTACCTTCGCGCGCCTCCGTTA 7816 >seq5444 Length=4073 Score = 96.9 bits (106), Expect = 3e-18 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| |||||||||| || | ||| |||||||||| | || |||||||| |||| Sbjct 2903 GTTGAGCGACGGCCCTTCCACTCGGTACCGTCGGATCACTAAGGCCAGCTTTCGCTCCTG 2962 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATGT 142 ||||| || ||| ||||||||||| ||| |||| || |||| || || ||| | Sbjct 2963 CTCGACTTGTAGGTCTTGCAGTCAAGCCCCCTTTTGCCTTTACACTCAATGTC-TGATTT 3021 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| || | || |||||| | || |||| |||| Sbjct 3022 CCGTCCAGACTGAGGGGACCTTTGCGCGCCTCAGTTA 3058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473525559700