Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq24 289 4e-76 seq2739 282 7e-74 seq5444 141 1e-31 seq6395 105 1e-20 >seq24 Length=14409 Score = 289 bits (320), Expect = 4e-76 Identities = 220/260 (85%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 ||||||||||||||||| ||||| ||| |||||||| ||| || |||| |||| Sbjct 8304 GCTTAGATGCCTTCAGCGGTTATCTAGTCCGCACTTAGCTACCCTGCAATGCGGCTGGCG 8245 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| ||| |||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 8244 CCACAACAGGTCCACCAGAGGTGCGTCCATCCCGGTCCTCTCGTACTAGGGACAGATCCT 8185 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| |||||| |||||| | |||||||||||||||||||| ||||||||||||||| Sbjct 8184 CTCAATACTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTGAACCC 8125 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| |||||||||||||| || ||||||||| Sbjct 8124 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTTCTCCAGCCCCAG 8065 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 8064 GATGTGATGAGTCGACATCG 8045 >seq2739 Length=670 Score = 282 bits (312), Expect = 7e-74 Identities = 224/268 (84%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 |||||| |||||||||| |||||| ||||||| ||| | ||||| ||| || | Sbjct 350 GGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCGTCCGTGCATAGCTACCCTGCGGCAC 409 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 |||||||| | || ||| ||||||||| || || |||||||||||||||||| || Sbjct 410 CCTTGGCAGGATGACAGGTACACCAGAGGCACGTTCACCCCGGTCCTCTCGTACTAGGGT 469 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 || ||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||| Sbjct 470 CAACTCCTCTCAAATTTCG-ACGCCCACGGCAGATAGGGACCAAACTGTCTCGCGACGTT 528 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 ||||||||||||| ||| || ||||||| ||||||||||| |||||||||||||| || | Sbjct 529 CTGAACCCAGCTCACGTACCACTTTAATTGGCGAACAGCCAAACCCTTGGGACCTGCTCC 588 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| || |||||||||||| Sbjct 589 AGCCCCAGGATGTGATGAGCCGACATCG 616 >seq5444 Length=4073 Score = 141 bits (156), Expect = 1e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| Sbjct 2737 ACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 2796 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||||||| || |||||||||||| Sbjct 2797 ACTACAGCCCCAGGATGTGATGAGCCGACATCG 2829 Score = 77.0 bits (84), Expect = 5e-12 Identities = 123/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 7 GGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TAT 65 || ||||| ||||||||| ||||| ||||| | |||| | ||||| ||| || | | Sbjct 1709 GGACTTCGTACTTAGATGCATTCAGTACTTATTCACTCCATGCGTAGCTACCCTGCGTTT 1768 Query 66 GCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCA-TCCCGGTCCTCTCGTACTAA 124 | |||| | | ||| ||| ||||| ||| ||| | | | ||||||||||||||| Sbjct 1769 ACTTTTGGAAAAATAACAGGTACACCATAGGCATGTTCGCTACAGGTCCTCTCGTACTAT 1828 Query 125 GGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCT 178 | | || ||||| ||| |||| | |||||| |||||||||||||| Sbjct 1829 GAGCGACTGACCTCAATATTCTAACGCTAATACCGGATATGGACCGAACTGTCT 1882 >seq6395 Length=39126 Score = 105 bits (116), Expect = 1e-20 Identities = 185/264 (70%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 11 TTCGGGCTTA-GATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCAC 69 ||| |||||| ||||| |||||| | || || | |||||||| | |||| |||| | Sbjct 9765 TTCTGGCTTAAGATGCTTTCAGC-CATACTGTTTGCTCACTTAGCTGCTCAGCAATGCGC 9823 Query 70 TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA 129 | | ||||||| | |||||| ||| | | | | |||||| ||||||||| | | Sbjct 9824 TATTAAACACAACTGATACACCAGGGGTGAGGGCTTTCAGGTCCTTTCGTACTAA--AAA 9881 Query 130 GCTCCTCTCAA--ATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 || || | || ||| | || | | || || | | ||| |||| || | ||| Sbjct 9882 GC--CTATGAACCATTCCATAAAACTGCCACAGAGAAGAGCCGTGCTGTGTCACCACGCA 9939 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 ||||||||||||| ||| || ||||||| | ||||||| | ||||||| |||| |||| Sbjct 9940 CTGAACCCAGCTCACGTACCGCTTTAATAGACGAACAGTCTAACCCTTCTAACCTTCTTC 9999 Query 248 AGCCCCAGGATGAGACGAGCCGAC 271 ||| |||| | || |||||||| Sbjct 10000 AGCTAGAGGACGCGATGAGCCGAC 10023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780677274100