Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq24 298 1e-78 seq3385 277 4e-72 seq14742 230 6e-58 seq13206 228 2e-57 >seq24 Length=14409 Score = 298 bits (330), Expect = 1e-78 Identities = 191/208 (92%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||||||||| Sbjct 3378 CTTTACAACCCTAAGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 3319 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 3318 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 3259 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| || Sbjct 3258 TGGCTGGTCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTAGGCCATTACCCCACC 3199 Query 184 AACTAGCTAATCCCATCTGGGTTCATCC 211 ||||||||||||| | ||| |||||| Sbjct 3198 AACTAGCTAATCCGACGCGGGCTCATCC 3171 >seq3385 Length=505 Score = 277 bits (306), Expect = 4e-72 Identities = 177/193 (92%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||| ||| |||||||||| |||| ||||||||| ||||||| Sbjct 257 CTTTACAACCCTAAGGCCTTCATCACTCACGCGGCATTGCTGGATCAGGCTTTCGCCCAT 316 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| Sbjct 317 TGTCCAATATTCCCCACTGCTGCCACCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 376 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||| || Sbjct 377 TGGCTGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCATTACCCCACC 436 Query 184 AACTAGCTAATCC 196 ||||||||||||| Sbjct 437 AACTAGCTAATCC 449 >seq14742 Length=52551 Score = 230 bits (254), Expect = 6e-58 Identities = 244/318 (77%), Gaps = 14/318 (4%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| ||||||| || ||| |||||||||| ||||||||||| || |||||||| Sbjct 3570 CCTTCTTCACTCACGCGGTATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCA 3629 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 ||||||||| |||||| ||||||| |||||||||||| |||||||||||| ||||||||| Sbjct 3630 CTGCTGCCTTCCGTAGAAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT 3689 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCA- 198 ||||||||||| ||||||||||| || ||||||||||| |||||||||||||| | Sbjct 3690 CAGACCAGCTACTGATCGTCGCCTTGGGAAGCCATTACCCCCCCAACTAGCTAATCAGAC 3749 Query 199 TCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTAT 258 | | || || | || | || || | || || | || | | | |||| Sbjct 3750 GCAAGCCTC-TC---TCTTG--------GCAGTTCTCACTTTTCGCTCCT-CAGCATTAT 3796 Query 259 GCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATT 318 | ||||||||| | |||||| | |||||||||| ||| ||| | ||| | || Sbjct 3797 GGGGTATTAGCAGCAGTTTCCCGCTGTTATCCCCCGCCAAAAGGTAAGTTCTTACGTGTT 3856 Query 319 ACTCACCCGTCCGCCACT 336 |||||||||| ||||||| Sbjct 3857 ACTCACCCGTACGCCACT 3874 >seq13206 Length=631 Score = 228 bits (252), Expect = 2e-57 Identities = 144/156 (92%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||||||||||||||||| ||||||||||| |||| |||||| || | || Sbjct 476 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTTCCCC 535 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 536 CATTGTCCAATATTCCCCACTGCAGCCACCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 595 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156 ||||||||| |||||||||||||||||||| ||||| Sbjct 596 GTGTGGCTGATCATCCTCTCAGACCAGCTACGGATC 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222201665600