Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq24 396 8e-108 seq3385 394 3e-107 seq14742 356 7e-96 seq13206 259 1e-66 >seq24 Length=14409 Score = 396 bits (438), Expect = 8e-108 Identities = 377/479 (79%), Gaps = 20/479 (4%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGA-TAACATACC 81 |||||| ||||||||||||||||||||| || || |||| | ||||| ||||| | Sbjct 3060 AGCGGCAGACGGGTGAGTAACGCGTGGG-AATCTACCCTTCTCT-ACGGAATAACACAGA 3117 Query 82 GAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCC 141 |||| | ||||||||| ||||| | || | ||| |||| || Sbjct 3118 GAAATTTGTGCTAATACCG-----TATACGTCCTCCGGGAGAAAGATTTATCGGAGA--- 3169 Query 142 GGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGG 201 ||||| |||||||| ||||||||||||||| ||||| ||| |||||||| Sbjct 3170 --------AGGATGAGCCCGCGTCGGATTAGCTAGTTGGTGGGGTAATGGCCTACCAAGG 3221 Query 202 CGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCA 261 |||||||| ||||| | |||||||| ||| | |||||| ||| |||||||||||| ||| Sbjct 3222 CGACGATCCGTAGCTGGTCTGAGAGGATGACCAGCCACACTGGGACTGAGACACGGCCCA 3281 Query 262 AACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCA 321 |||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 3282 GACTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCC 3341 Query 322 ACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATG 381 | |||||||||| |||||||||||| |||| |||||||||| || | |||||||||| Sbjct 3342 ATGCCGCGTGAGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTCACCGGTGAAGATAATG 3401 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 |||||| | || |||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 3402 ACGGTAACCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGG 3461 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||||||||| | |||||||||| |||||||||| | |||||| || ||||||| Sbjct 3462 GGGCTAGCGTTGTTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCGGACGTTTAAGTC 3519 >seq3385 Length=505 Score = 394 bits (436), Expect = 3e-107 Identities = 298/350 (85%), Gaps = 1/350 (0%) Strand=Plus/Minus Query 151 GGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCA 210 |||| | ||||||| ||||||||||||||| ||||| ||| |||||||||||||||| Sbjct 464 GGATGGGCCCGCGTTGGATTAGCTAGTTGGTGGGGTAATGGCCTACCAAGGCGACGATCC 405 Query 211 GTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTAC 270 |||| | |||||||| ||||| |||||| ||| |||||||||||| ||| |||||||| Sbjct 404 ATAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTAC 345 Query 271 GGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGT 330 ||| |||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||| Sbjct 344 GGGTGGCAGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGT 285 Query 331 GAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTT 390 ||| |||||||||||| |||| |||||||||| | || ||| ||||||||| |||| | Sbjct 284 GAGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTTACCAGGGATGATAATGACAGTACCT 225 Query 391 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 450 | || |||| |||||||||| |||||||||||||||||||||||| |||| ||||||| Sbjct 224 GGAGAATAAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGAGCTAGCG 165 Query 451 TTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || | |||||||||| |||||||||| | |||||| || || ||||||| Sbjct 164 TTGTTCGGAATTACT-GGGCGTAAAGCGCACGTAGGCGGCTTTTTAAGTC 116 >seq14742 Length=52551 Score = 356 bits (394), Expect = 7e-96 Identities = 289/344 (84%), Gaps = 7/344 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| | | Sbjct 3751 GCGTCTGATTAGCTAGTTGGGGGGGTAATGGCTTCCCAAGGCGACGATCAGTAGCTGGTC 3692 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| ||| |||||| ||||||| Sbjct 3691 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTTCTACGGAAGGCAGC 3632 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||| || |||||||||| ||||||||||| ||||| ||||||||| || ||| Sbjct 3631 AGTGGGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAATACCGCGTGAGTGAAGAA 3572 Query 341 GGCCTTCG-GGTC-GTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAG 396 || |||| || | |||||||||| | || |||||||| ||||||||||||| |||| Sbjct 3571 GG--TTCGTGGACTGTAAAGCTCTTTTCTTAAGGAAGAACAAATGACGGTACTTAAGGAA 3514 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| |||||||||| |||||||||||||||||||||| ||| || |||||| ||| Sbjct 3513 TAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGGGGGTGCAAGCGTTGTCC 3454 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| | | |||||||||| | ||||||||||||| ||||| Sbjct 3453 GGAATGA-TTGGGCGTAAAGCATCTGTAGGTGGTTTCTAAAGTC 3411 >seq13206 Length=631 Score = 259 bits (286), Expect = 1e-66 Identities = 246/318 (77%), Gaps = 26/318 (8%) Strand=Plus/Minus Query 206 GATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACT 265 |||| ||||| | |||||||| ||||| |||||| |||||||||||||||||||| ||| Sbjct 631 GATCCGTAGCTGGTCTGAGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCAGACT 572 Query 266 CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGC 325 |||||||| ||| |||||||||||||||| |||||||| ||| |||||| |||||| || Sbjct 571 CCTACGGGTGGCTGCAGTGGGGAATATTGGACAATGGGGGAAACCCTGATCCAGCAATGC 512 Query 326 CGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTC---CTCAAGGAAG------- 375 |||||| | || |||||||||||||| ||||||| || || |||||| Sbjct 511 CGCGTGTGTGAAGAAGGCCTTCGGGTTGTAAAGCACTTTCAGTTGTGAGGAAGGGTGTAG 452 Query 376 ---------------ATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCA 420 || ||||| ||| | || ||||| |||||||||| ||||||| Sbjct 451 TGTTAATAGCTCTGCATTTTGACGTTACCTACAGAAGAAGCACCGGCTAACTCCGTGCCA 392 Query 421 GCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTG 480 ||||||||||||||||| |||| || ||||||| |||||||||| |||||||||| | | Sbjct 391 GCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCG 333 Query 481 CGTAGGTGGTTTCTTAAG 498 ||||||||| || |||| Sbjct 332 CGTAGGTGGCTTGGTAAG 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497357014400