Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq24 315 2e-83 seq14742 197 5e-48 seq90 196 2e-47 seq3940 82.4 3e-13 >seq24 Length=14409 Score = 315 bits (348), Expect = 2e-83 Identities = 364/481 (76%), Gaps = 12/481 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAG--TCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| || ||| || | |||||||||||| | |||||||| ||| Sbjct 6302 CGAGTCTGAATAGGGCGTCAAGTTCGTTGAAT-TAGACCCGAAACGAGGTGATCTAGCCA 6360 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || ||||| ||||||||||||||||||| ||| ||| |||||||||| |||||||||| Sbjct 6361 TGACCAGGCTGAAGGTGCGGTAACACGCACTGAAGGGCCGAACCCACGTCTGTTGAAAAA 6420 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||||||||| ||||| |||||||||||||| || ||||| | ||||||||||||||| Sbjct 6421 GCCGGGGATGAGTTGTGGCTAGGGGTGAAAGGCCAATCAAACCTCGAAATAGCTGGTTCT 6480 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTC-AAGTATCACCATCGGGGGTAGAGCACTGTTAT 238 | ||||| |||||||||||| || || || | ||| ||||||||||||||| Sbjct 6481 CCGCGAAATCTATTTAGGTAGAGCGTCGAACTTATACCCCTGGGGGTAGAGCACTGGATG 6540 Query 239 GGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTA 298 ||| |||||| | | | |||||| | || |||||||||||| | ||| || Sbjct 6541 GGCAAGGGGGACCTACAGTCTTACCGATCCCAACCAAACTCCGAATACCAGGGAGTACTA 6600 Query 299 CCGCGGGAGT--GAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 ||| ||| | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 6601 -TTCGGCAGTCACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCTGAC 6657 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||||| ||| || | || ||||||| | ||||| || || | | || || Sbjct 6658 CGCCAGCTAAGGTCCCCAAGTCACGGCTAAGTGTGA--AACGATGTGAGAATCCCAAAAC 6715 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | ||||||||||||| |||||||||| ||||||||||| ||||||||||||||| || Sbjct 6716 AACCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAACAGCTCACTGGT 6774 Query 477 C 477 | Sbjct 6775 C 6775 >seq14742 Length=52551 Score = 197 bits (218), Expect = 5e-48 Identities = 377/543 (69%), Gaps = 17/543 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| |||||||||| || ||| || | | |||||||| | ||||||| ||| Sbjct 905 CGAGTCTGAACAGGGCGTCAAGTCACTTCTTATGGACCCGAACCTGGATGATCTAATCAT 846 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||| | ||||| | |||||| | |||||| | |||| |||| |||||||||||| Sbjct 845 GGCCAAGTTGAAGCTTGGGTAACGCTAAGTGGAGGACTGAACTCACTGATGTTGAAAAAT 786 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| ||||||||||| ||| ||||||| | || | || | || ||||||| |||| Sbjct 785 CAGGAGATGAGCTGTGATTAGCGGTGAAATTCCAATCGAATTCAGAGCTAGCTGGATCTC 726 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCA-TCGGG-GGTAGAGC-ACTGTTA 237 |||||| || ||| || | | || || || |||||||| |||||| Sbjct 725 CCCGAAATGCGTTGAGGCGCAGCGGCGACGATGTCCTGTCTAAAGGTAGAGCGACTGTTT 666 Query 238 TGGCTAGGGGGTC-ATTGCGACTTACCAAACCATTGCAAACTCCGAATGC---GCATCAG 293 || ||| | | ||| |||||| | | ||||||||||||| |||| | Sbjct 665 CGGTGCGGGCTGCGAAAGCGG--TACCAAGTCGTGGCAAACTCCGAATATTAGGCATTGG 608 Query 294 TTTTACCGCGGG--AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATC 351 || ||| | | |||||| |||| | |||| | | | ||||||| || | | Sbjct 607 ATT--CCGTGAGCCAGTGAGACTGTGGGAGATAAGTTTCATAGTCGAGAGGGAAACAGCC 550 Query 352 CGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCT 411 | ||| ||||||||||||||| ||||| | ||||||| || || || || || |||| Sbjct 549 CAGACCATCAGCTAAGGCCCCTAAATGGCTGCTAAGTGGAA--AAGGATGTGAGAATGCT 492 Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 | ||| | |||| ||| |||| |||||||| |||| || ||||||||||||| |||||| Sbjct 491 GAAACAACCAGGAGGTTCGCTTAGAAGCAGCTATTCCTTGAAAGAGTGCGTAATAGCTCA 432 Query 472 CTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGG 531 || || || || ||| || ||| |||| | |||| | || ||||||| ||| Sbjct 431 CTGGTAAAGCGTTCTTGCGCCGACAATGGCCGGG-ACTAAGCAGCCTGCCGAAGCTATGG 373 Query 532 GAT 534 ||| Sbjct 372 GAT 370 >seq90 Length=1616 Score = 196 bits (216), Expect = 2e-47 Identities = 189/238 (79%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC--AGT-CGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 |||||| ||| ||||||| ||| || | || |||||||||||| |||||||| || Sbjct 330 CGAGTCTGAATAGGGCGAATAAGTACGTCGCATGACGACCCGAAACCAGGTGATCTATCC 271 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||| |||| |||||| |||||||| ||||||| |||||||| ||||||||||| Sbjct 270 ATGAGCAGGTTGAAGGCTGGGTAACACCAGCTGGAGGACCGAACCCGTGAATGTTGAAAA 211 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||| ||||||| ||||| |||||||||||||| || ||||| |||| ||||||||||| Sbjct 210 ATTCTGGGATGACTTGTGGATAGGGGTGAAAGGCCAATCAAACCTGGACATAGCTGGTTC 151 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCT--CAAGTATCACCATCGGGGGTAGAGCACTG 234 || ||||| |||||||||||| || | | |||| || | ||||||||||||||| Sbjct 150 TCCGCGAAATCTATTTAGGTAGAGCGTTGGATGTAT-TCCTTGGGGGGTAGAGCACTG 94 >seq3940 Length=11885 Score = 82.4 bits (90), Expect = 3e-13 Identities = 98/132 (74%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 51 ATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAAT 110 ||||| |||||||| | ||||| | |||||| | |||||| | |||| |||| || Sbjct 10998 ATCTAATCATGGCCAAGTTGAAGCTTGGGTAACGCTAAGTGGAGGACTGAACTCACTGAT 10939 Query 111 GTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATA 170 ||||||| | ||| ||||||||||| ||| ||||||| | || | || | || || Sbjct 10938 GTTGAAA--TCAGGAGATGAGCTGTGATTAGCGGTGAAATTCCAATCGAATTCAGAGCTA 10881 Query 171 GCTGGTTCTCTC 182 ||||| |||||| Sbjct 10880 GCTGGATCTCTC 10869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689325862400