Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq90 134 3e-29 seq24 109 1e-21 seq14742 98.7 2e-18 >seq90 Length=1616 Score = 134 bits (148), Expect = 3e-29 Identities = 247/368 (67%), Gaps = 57/368 (15%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||| ||||||||||||||||||| | | ||||||| Sbjct 979 AGAGCATTTGGTGGATGCCTTGGCATGTACAGGCGATGAAGGACGTGGCACGCTGCGATA 920 Query 61 AGCTGCGGGGA---GTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACC- 116 ||| |||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 919 AGCGTCGGGGAGTTGTGAGCAA----ACTTTGATCCGGCGATTTCCGAATGGGGAAACCC 864 Query 117 ---------------------CGGCCCT----------------------TTGGGTCATT 133 | ||||| | ||| Sbjct 863 ACCTTCACCATTTCTTCCAGTCTGCCCTCGGGCAGGCCGGGCGAGGTGGATAAGGTATCA 804 Query 134 GCATGCTGAATACATAGGTAT-GCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCT 192 || ||||||| |||||| | | |||||||| ||| |||||||||||||| |||| | Sbjct 803 CCAGACTGAATATATAGGTTTGGTGAAGCGAACCCGGGGAACTGAAACATCTCAGTACCC 744 Query 193 GCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA-GCCT 251 | ||||||||| |||||| ||||||||| |||||||||||||||| |||| | ||| Sbjct 743 GGAGGAAAAGACATCAACAGAGATTCCCGTAGTAGTGGCGAGCGAACCGGGACCAGGCCA 684 Query 252 TTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATA 311 | | | | || || ||| ||| |||||||| ||| |||||||||| | Sbjct 683 GTGCCA-TCATTTCAA---CTAGCAGAACATTCTGGAAAGTTTGGCCGTAGCGGGTGACA 628 Query 312 GCCCCGTA 319 |||||||| Sbjct 627 GCCCCGTA 620 >seq24 Length=14409 Score = 109 bits (120), Expect = 1e-21 Identities = 95/117 (81%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| ||||||||||||||||| | | |||||||||||||||| ||| ||||||| Sbjct 5635 AGGGCATCTGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATA 5694 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| ||||||| || ||| |||||||||| ||| ||||||||||||||||| Sbjct 5695 AGCGTCGGGGAG-CTGCGAACGAGCTTTGATCCGACGATCTCCGAATGGGGAAACCC 5750 Score = 93.3 bits (102), Expect = 8e-17 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 160 GCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCC 219 |||||| ||| ||||||||||||||||||| | | |||||| || ||||||||||| ||| Sbjct 5851 GCGAACCCGGGGAACTGAAACATCTAAGTACCCGGAGGAAAGGACATCAACCGAGACTCC 5910 Query 220 CAAAGTAGTGGCGAGCGAA 238 |||||||||||||||| Sbjct 5911 GCTAGTAGTGGCGAGCGAA 5929 >seq14742 Length=52551 Score = 98.7 bits (108), Expect = 2e-18 Identities = 181/265 (68%), Gaps = 24/265 (9%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||| ||| ||| | | || ||||||||| || || | |||||| ||| |||| Sbjct 1668 GGTGGAGACCTAGGCACTCAGAGACGATGAAGGGCGCAGATACCGGCGATACGCTTCGGG 1609 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACC----CGGCC---C 122 ||| | || || | | |||||| ||||| |||||| ||| |||| | ||| | Sbjct 1608 GAGCTGGTAA-CAAGCATAGATCCGAAGATTCCCGAATAGGGCAACCTCCTCTGCCTACC 1550 Query 123 TTTGGGTC---------------ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACG 166 || ||| | | | | ||||| ||||| | | || || ||| Sbjct 1549 TTGCGGTAGGCAAAGAAACGAGAACTCCTTTTTGAATTCATAGAAAAGGAAGAGGCAACC 1490 Query 167 CGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTA 226 ||| |||||||||||||| |||||| | ||||||||||| ||| | ||||||| |||| Sbjct 1489 CGGTGAACTGAAACATCTCAGTAGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTA 1430 Query 227 GTGGCGAGCGAAATGGGATGAGCCT 251 | |||||||||| ||||| ||||| Sbjct 1429 GCGGCGAGCGAAGTGGGAATAGCCT 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918250989600