Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq24 410 4e-112 seq5444 179 1e-42 seq6395 91.5 5e-16 >seq24 Length=14409 Score = 410 bits (454), Expect = 4e-112 Identities = 431/566 (76%), Gaps = 22/566 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||||||||||| || ||| ||| || ||||| || |||| || Sbjct 7910 TCGACGTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCGCCGAACGATTTCC 7851 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| ||||| ||||| | ||||||||||||| ||||||||| | |||||||||| Sbjct 7850 GACCGTTCTGAGCCTACCTTCGCGCGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCAG 7792 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCCA 179 | ||||||||||||| ||||||||| |||| | | || ||||| ||||||| | || Sbjct 7791 TCAAACTACCCACCACACACTGTCCCGGACCCTGCTTCAAGGGCCGCGGTTAGACAGTCA 7732 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 ||| | || |||||||||||| | | |||||| | || ||| ||| ||| || Sbjct 7731 TGACGATAAGGGTGGTATTTCAAGGATGGCTCCACGAGAGCTGGCGCCCTCGCTTCAAAG 7672 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 || |||||||||||||||| ||| ||||||||| | ||| | |||| ||||| | Sbjct 7671 CCTACCACCTATCCTACACATGCCGACACGAATGCCAGTGTGAAGTTGTAGTAAAGGTGC 7612 Query 300 -CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||| Sbjct 7611 ACGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACT 7552 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | ||||||| | |||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 7551 GAGCCTGTGCTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 7492 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 7491 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTT 7432 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACC 538 ||||| || | || ||| ||||||||||||||| ||||| Sbjct 7431 CAATT-----------------CGGAGCTTG--CACCCCTCCTCTTAACCTTCCGGCACC 7391 Query 539 GGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||| || ||||| ||| Sbjct 7390 GGGCAGGCGTCAGACCCTATACGTCG 7365 >seq5444 Length=4073 Score = 179 bits (198), Expect = 1e-42 Identities = 334/483 (69%), Gaps = 7/483 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||| ||||| ||| ||||||||| |||||| || Sbjct 2964 TCGACTTGTAGGTCTTGCAGTCAAGCCCCCTTTTGCCTTTACACTCAATGTCTGATTTCC 3023 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||| ||||||| ||||||| ||||| |||| |||| | ||||||||| Sbjct 3024 GTCCAGACTGAGGGGACCTTTGCGCGCCTCAGTTACCTTTTATGAGGCCT-CCGCCCCAG 3082 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCCA 179 ||||| |||||| | |||||| || ||| || || || |||| || | Sbjct 3083 AGAAACTGCCCACCTGAAACTGTCAAGTGTCCTGATTCAAGGATCACCATTAGGATTCTA 3142 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 ||||||||| | ||| | | ||||| | | | | | ||| | Sbjct 3143 GCCTTTCCAGAGTGGTCTCTCACTGATGGCTCCAACTTCCCCGGAAGGAAATCTTCAACG 3202 Query 240 TCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 |||||||||| || | ||| | || ||||| ||||| ||||| || ||| ||| | Sbjct 3203 CCTCCCACCTAGGCTGCGCAAGAAAAGC-CCGAAC-CCAATTCCAAGATACAGTCAAGCT 3260 Query 298 CCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 | |||||||| |||| | | ||||||| || | | |||||| Sbjct 3261 TCATAGGGTCTTTCTGTCCAAGTATTAGTAGTCCGCATCTTCACGGACAAGTCTATTTCA 3320 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 ||| | || | |||||||| || ||||||| ||||||||||||| |||||| Sbjct 3321 CCGAGTCTCTCTCCGAGACAGCGTTCTGATCATTACGCCTTTCGTGCAGGTCGAAACTTA 3380 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 | |||||| ||||||||||||||||||| || |||||||| |||||||| || ||||| Sbjct 3381 CTCGACAATGAATTTCGCTACCTTAGGACTGTCATAGTTACAGCCGCCGTTCACCGGGGC 3440 Query 477 TTC 479 ||| Sbjct 3441 TTC 3443 >seq6395 Length=39126 Score = 91.5 bits (100), Expect = 5e-16 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| || | || | ||||||||| ||| ||||| | ||| |||||||||||| Sbjct 11100 GAGACAGCGGGTGGGTGATGACGCCATTCATGCGGGTCGACAATTATTCGACAAGGAATT 11159 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||| | ||| ||||| | |||||||||||| ||||| Sbjct 11160 TCGCTACCTTAGAACCCTTAGAGTTAGGGCTGCCGTTTACTGGTCCTTCA 11209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702123785600