Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq3385 196 1e-47 seq24 176 1e-41 seq14742 141 2e-31 seq13206 123 5e-26 >seq3385 Length=505 Score = 196 bits (216), Expect = 1e-47 Identities = 229/313 (73%), Gaps = 20/313 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||| |||||||| |||||| || Sbjct 189 GGCTGCTGGCACGGAGTTAGCCGGAGCTTATTCTCCAGGTACTGTCA------------- 235 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | ||||| ||||||| ||||||| || || |||||||| |||||| Sbjct 236 ------TTATCATCCCTGGTAAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGC 288 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||||| |||| || ||| |||||| |||||||||| |||||||||| ||||||| Sbjct 289 GGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCACCCGTAG 348 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | |||| || Sbjct 349 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTATGGAT 408 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACA 300 ||| | || ||| |||| ||||||| || |||| ||||| ||||| |||||| | Sbjct 409 CGTCGCCTTGGTAGGCCATTACCCCACCAACTAGCTAATCCAACGCGGGCCCATCCAAAG 468 Query 301 CCGATGAATCTTT 313 |||| ||||||| Sbjct 469 GCGATAAATCTTT 481 >seq24 Length=14409 Score = 176 bits (194), Expect = 1e-41 Identities = 179/232 (77%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || || |||||||| |||||| | ||||||| |||| || Sbjct 3384 AAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 3326 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 3325 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 3266 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||| ||||| | | |||||||||| | ||| ||||| | || ||| |||| ||| Sbjct 3265 CCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTAGGCCATTA 3206 Query 262 CCCCGCCTACTACCTAATGGAACGCATCCCCATCGTACACCGATGAATCTTT 313 |||| || |||| ||||| |||| | |||| | | ||||| ||||||| Sbjct 3205 CCCCACCAACTAGCTAATCCGACGCGGGCTCATCCTTCTCCGATAAATCTTT 3154 >seq14742 Length=52551 Score = 141 bits (156), Expect = 2e-31 Identities = 203/287 (71%), Gaps = 18/287 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | | |||| ||| Sbjct 3484 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTTAAGTAC---------------CGT 3528 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | | || |||| | | |||||| |||||| ||| |||||||| || |||||| Sbjct 3529 C--ATTTGTTCTTCCTTAAGAAAAGAGCTTTACAGTCCAC-GAACCTTCTTCACTCACGC 3585 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 3586 GGTATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTTCCGTAG 3645 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 ||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 3646 AAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 3705 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCA 287 ||| | || || ||| ||||||| || |||| ||||| ||||| Sbjct 3706 CGTCGCCTTGGGAAGCCATTACCCCCCCAACTAGCTAATCAGACGCA 3752 >seq13206 Length=631 Score = 123 bits (136), Expect = 5e-26 Identities = 112/140 (80%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||| ||| || ||||| || ||||| | | ||||| |||| | || |||| Sbjct 480 TTTACAACCCGAAGG-CCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTTCCCCCAT 538 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||| ||| ||||||||||| |||||||||||||||||||| || Sbjct 539 TGTCCAATATTCCCCACTGCAGCCACCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 598 Query 209 TGGGGGACCTTCCTCTCAGA 228 ||| || | |||||||||| Sbjct 599 TGGCTGATCATCCTCTCAGA 618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068626587200