Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq14742 533 2e-146 seq90 86.0 8e-12 >seq14742 Length=52551 Score = 533 bits (590), Expect = 2e-146 Identities = 735/1020 (72%), Gaps = 6/1020 (1%) Strand=Plus/Plus Query 189983 ATGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTC 190042 ||||||||| | ||||||||| | | ||| || ||||| ||||| |||||||| Sbjct 37758 ATGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTC 37817 Query 190043 TGGATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGAC 190102 || | |||||||| || ||||||| | ||| |||| || ||| ||||||| || || Sbjct 37818 AGGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAAC 37877 Query 190103 GTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTT 190162 |||| ||| |||||||| || || | || | || | || ||| ||| || Sbjct 37878 TTTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTT 37937 Query 190163 TCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-T 190221 | ||||| ||||| ||||| ||||| | ||||| ||| ||| || || | ||| | Sbjct 37938 CTTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTAT 37996 Query 190222 GGGGTCCTGAATCTCAAGGCGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCT 190280 |||| |||||| | ||||| || ||| || | ||| ||| | || || || ||| | Sbjct 37997 GGGGACCTGAAGCACAAGGTGACTTTACTC-GTTGGTGTCAATTAGGTGGTCTATGGACA 38055 Query 190281 TTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTG 190340 ||| | || | || || |||||| | |||||||||| ||| | ||||| |||||| | Sbjct 38056 TTTATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATT 38115 Query 190341 GCACGTCTCA-TCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGT 190399 || ||| ||| | | | ||||| |||||||||||||| ||||| | ||||| | || Sbjct 38116 GCTCGT-TCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGT 38174 Query 190400 TTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATC 190459 ||||||| || || | || ||||| | || ||||| | ||||| || || || Sbjct 38175 TTTTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAG 38234 Query 190460 CTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGAC 190519 || ||||| ||||| || ||||| ||| | | || || || ||||||||||||||||| Sbjct 38235 TTTTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGAC 38294 Query 190520 GCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGC 190579 | ||||| ||||||||||||||||| |||||| | | |||| || ||| | | || Sbjct 38295 TTTAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGC 38354 Query 190580 AATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTT 190639 || || |||| ||||| || || || || | |||||||||||| || ||||| || Sbjct 38355 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATT 38414 Query 190640 TAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTT 190699 ||||| || | ||||||| ||||| || || || ||||| || || |||||||| Sbjct 38415 CCGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTT 38474 Query 190700 CTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCT 190759 |||||||||||| ||||| ||||| ||| ||||| | ||| | || ||||| ||||| Sbjct 38475 CTGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCT 38534 Query 190760 CTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAA 190819 ||||||||||| | ||||| |||| || | || ||| | |||| | ||| | || Sbjct 38535 TCTTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAA 38594 Query 190820 CCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGA 190879 | |||||||||||||| || || ||||| || | ||||| || ||||| || ||||| Sbjct 38595 TTTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGA 38654 Query 190880 GACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGT 190939 ||||| |||||||||||||| |||| ||||||||| | ||| | ||| |||| | Sbjct 38655 AACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCA 38714 Query 190940 TGATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||||| ||||| | ||||||| || ||||||||||| || | || || ||||| Sbjct 38715 AGACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTCT 38774 Score = 280 bits (310), Expect = 2e-70 Identities = 271/348 (78%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 189355 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGT 189414 || |||||||| ||||||||||| || |||||||| ||||||||| | || || || ||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 189415 GTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTT 189474 || || ||||||||| | ||||| |||||||| |||||| | || || || || | | Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 189475 CGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAA 189534 |||||||| ||||||| ||| || ||| | || ||||| || || |||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 189535 ACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCG 189594 || |||||||| || ||||| ||||| || || || ||| | ||||||||||| || || Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 189595 TTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGG 189654 ||||||||||| |||||| | ||||||||| | ||||| |||||||| || ||||| ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 189655 TTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTC 189702 || || || | || | || |||||||||||| | || || ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 277 bits (306), Expect = 2e-69 Identities = 286/372 (77%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 || || |||||| | || |||| | |||||| | || |||||||||||||||| | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| | | | || || |||| |||||| |||| || |||||||||| Sbjct 12211 ATGATCCCTACATTATTAACAGCTACT-TCTGTATTCATCATCGCTTTCATCGCTGCACC 12153 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || || || || ||||| || || || || || |||||||| | | || |||||||| Sbjct 12152 TCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 12093 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 ||||||||||||||||||||| ||| |||| ||||| |||||| | || |||||||| || Sbjct 12092 CATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAAT 12033 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 |||||||| | || | ||||||||| | |||||||||||||||| |||| | | || Sbjct 12032 TTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 11973 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCG 189209 | ||||||| || | || || | | ||||||||||||||| |||||| | |||||||| Sbjct 11972 TTGCCACTTCTTCTTAGGTATTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTACCG 11913 Query 189210 TCTCGGTATGCG 189221 | | |||||||| Sbjct 11912 TTTAGGTATGCG 11901 Score = 116 bits (128), Expect = 5e-21 Identities = 109/136 (80%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 189217 ATGCGTCCTTGGATCTGCATT-GCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTT 189275 |||||||||||||| ||| | ||||||||||| || |||||||| || | ||||| || Sbjct 10477 ATGCGTCCTTGGAT-TGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATT 10419 Query 189276 TCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGG 189335 | |||||||| | || ||||||||||||||||| | ||||| || |||||| ||| Sbjct 10418 CATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGG 10359 Query 189336 AACCTTCAACTACATG 189351 ||| ||||||| |||| Sbjct 10358 AACTTTCAACTTCATG 10343 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 189701 TCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACG 189760 |||||||||| ||||| | |||| |||||||||||| | ||||| ||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 189761 TTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCC 189820 | ||||||||||| | ||||||||||| ||||| |||||||| || |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 189821 C 189821 | Sbjct 8165 C 8165 >seq90 Length=1616 Score = 86.0 bits (94), Expect = 8e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 19322 TACTTTGGCGGGGAATTAGCTCAAC-GGTAGAGCACCTGCTTTGCAAGCAGGGGGTTATC 19380 ||| || ||||| |||||||| | || ||||||||||||||||||||||||||| ||| Sbjct 1340 TACCTTTACGGGGCCTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCATC 1281 Query 19381 GGTTCGAATCCGATATTCTCCA 19402 ||||||| |||||| ||||| Sbjct 1280 GGTTCGATCCCGATAGGCTCCA 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633951400650000