Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq2179 84.2 1e-11 >seq2179 Length=647 Score = 84.2 bits (92), Expect = 1e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 8831 TCGTGACGCGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAATTGCCG 8890 |||| || ||| | || |||| |||| || ||||| || | || | ||| || |||| Sbjct 639 TCGTCACCCGGGTCGGGGCGCTGGGCGAGGTCGCCGGCGTTTCCTCGGCCGAGATCGCCG 580 Query 8891 CGATGGGCGCCACCATTGCCGGGATGGGGGTTGAATCAAGAAATTGCCTCAACCGGCATC 8950 | ||||| | || |||| ||| |||||||| || |||| || ||| | ||||||||| Sbjct 579 CCCTGGGCTCAACGATTGTCGGCATGGGGGTC-AACGAAGAGATCGCCGCCACCGGCATC 521 Query 8951 AAAAACTTCATGCTGTCGCTTACGGCGGGTAAATCCGCAACTAAGTCTCAGAAAGAAG 9008 || ||| ||||||| | || || ||| | |||| || ||| | ||| |||||| Sbjct 520 AAGAACACCATGCTGGCCCTGACCAAGGGCACGGCCGCCACCAAGGCCCAG-AAGAAG 464 Score = 82.4 bits (90), Expect = 4e-11 Identities = 125/177 (71%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 48421 TCGTGACGCGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAATTGCCG 48480 |||| || ||| | || |||| |||| || ||||| || | || | ||| || |||| Sbjct 639 TCGTCACCCGGGTCGGGGCGCTGGGCGAGGTCGCCGGCGTTTCCTCGGCCGAGATCGCCG 580 Query 48481 CGATGGGCGCCACCATTGCCGGGATGGGGGTTGAATCAGAAATTGCCTCAACCGGCATCA 48540 | ||||| | || |||| ||| |||||||| | ||| || ||| | |||||||||| Sbjct 579 CCCTGGGCTCAACGATTGTCGGCATGGGGGTCAACGAAGAGATCGCCGCCACCGGCATCA 520 Query 48541 AAAACTTCATGCTGTCGCTTACGGCGGGTAAATCCGCAACTAAGTCTCAGAAAGAAG 48597 | ||| ||||||| | || || ||| | |||| || ||| | ||| |||||| Sbjct 519 AGAACACCATGCTGGCCCTGACCAAGGGCACGGCCGCCACCAAGGCCCAG-AAGAAG 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247426263712600