Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1161 118 6e-25 seq2318 105 4e-21 seq5620 96.9 2e-18 >seq1161 Length=25034 Score = 118 bits (130), Expect = 6e-25 Identities = 95/113 (84%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGATAACATCGC 58 ||||||||| ||||||||||||| |||||||| | |||||| ||| ||||||| Sbjct 35 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCATCGAAT--TAACATCCG 92 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGT 111 || ||||||||||||||| ||||| |||| |||||| |||||||||||||||| Sbjct 93 CCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGT 145 >seq2318 Length=37263 Score = 105 bits (116), Expect = 4e-21 Identities = 96/119 (81%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA--AATGATAACATCGC 58 ||||||||| ||||||||||||| |||||||| | |||||| ||| ||||||| Sbjct 28889 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCATCGAAT--TAACATCCG 28832 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||||||||||| || ||||||||| |||||| | ||||||| | ||||||||| Sbjct 28831 CCAATCCCTAGTCGGTATCTTTTACGGTTGAGACTAGGGCGGTATCGCACCGTCTTCGA 28773 >seq5620 Length=8410 Score = 96.9 bits (106), Expect = 2e-18 Identities = 95/121 (79%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAA-CATC 56 |||||| || | |||||| |||| | |||||| | ||||| | | |||| |||| Sbjct 1866 GAACCCGAAAATTTTGATATCTCATGAGGTGCGGGCAGAGTCTTCGACTTAATAAACATC 1807 Query 57 GCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 || ||||||||||||||| |||||| | |||||||| |||||| |||||||||||||| Sbjct 1806 CTCCAATCCCTAGTCGGCATCGTTTACAGCTAAGACTAGGACGGTTTCTGATCGTCTTCG 1747 Query 117 A 117 | Sbjct 1746 A 1746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278294965770