Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015-
08-05] 40,243 sequences; 281,270,454 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq1161 118 6e-25
seq2318 105 4e-21
seq5620 96.9 2e-18
>seq1161
Length=25034
Score = 118 bits (130), Expect = 6e-25
Identities = 95/113 (84%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA--AAATGATAACATCGC 58
||||||||| ||||||||||||| |||||||| | |||||| ||| |||||||
Sbjct 35 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCATCGAAT--TAACATCCG 92
Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGT 111
|| ||||||||||||||| ||||| |||| |||||| ||||||||||||||||
Sbjct 93 CCAATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGT 145
>seq2318
Length=37263
Score = 105 bits (116), Expect = 4e-21
Identities = 96/119 (81%), Gaps = 4/119 (3%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA--AATGATAACATCGC 58
||||||||| ||||||||||||| |||||||| | |||||| ||| |||||||
Sbjct 28889 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCATCGAAT--TAACATCCG 28832
Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|| |||||||||||| || ||||||||| |||||| | ||||||| | |||||||||
Sbjct 28831 CCAATCCCTAGTCGGTATCTTTTACGGTTGAGACTAGGGCGGTATCGCACCGTCTTCGA 28773
>seq5620
Length=8410
Score = 96.9 bits (106), Expect = 2e-18
Identities = 95/121 (79%), Gaps = 4/121 (3%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAA-CATC 56
|||||| || | |||||| |||| | |||||| | ||||| | | |||| ||||
Sbjct 1866 GAACCCGAAAATTTTGATATCTCATGAGGTGCGGGCAGAGTCTTCGACTTAATAAACATC 1807
Query 57 GCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116
|| ||||||||||||||| |||||| | |||||||| |||||| ||||||||||||||
Sbjct 1806 CTCCAATCCCTAGTCGGCATCGTTTACAGCTAAGACTAGGACGGTTTCTGATCGTCTTCG 1747
Query 117 A 117
|
Sbjct 1746 A 1746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278294965770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |