Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2318 104 4e-20 seq12576 84.2 4e-14 >seq2318 Length=37263 Score = 104 bits (114), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGA 141 |||| ||||||||||||| ||||||||| |||| ||||||| |||||||| |||||| Sbjct 28561 AAAATATTAGAGTGTTCATAGCAGGCCTACGCTCTGAATACAGTAGCATGGGATAATACG 28620 Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201 || |||| | ||| |||| ||||||| | | | |||| ||||| | | | ||| | Sbjct 28621 ATTGGAC-TCTGGTCTTATTGTGTTGGTCTTTGGAACCGGAGTAAT--TAAGAACGGACA 28677 Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCT 241 || || || | ||||| ||||| ||||||| |||||| Sbjct 28678 GTTGGTGGCATTTGTATTTCATTGTTAGAGGTGTAATTCT 28717 >seq12576 Length=15549 Score = 84.2 bits (92), Expect = 4e-14 Identities = 77/94 (82%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 |||||||||| |||||||||||| || |||| ||| |||||||||||||| |||||| Sbjct 1196 GTCAGAGGTGCAATTCTTGGATTGAT-GAAGG---ACTTCTGCGAAAGCGTTCGCCAAGG 1141 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | ||||| ||| | | | ||||| ||||| |||| Sbjct 1140 ACGTTTTGATTCA-CTGAGAACGGAAGTTGGGGG 1108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914831696064