Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015-
08-05] 40,243 sequences; 281,270,454 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq2318 104 4e-20
seq12576 84.2 4e-14
>seq2318
Length=37263
Score = 104 bits (114), Expect = 4e-20
Identities = 121/160 (76%), Gaps = 4/160 (3%)
Strand=Plus/Plus
Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGA 141
|||| ||||||||||||| ||||||||| |||| ||||||| |||||||| ||||||
Sbjct 28561 AAAATATTAGAGTGTTCATAGCAGGCCTACGCTCTGAATACAGTAGCATGGGATAATACG 28620
Query 142 ATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATA 201
|| |||| | ||| |||| ||||||| | | | |||| ||||| | | | ||| |
Sbjct 28621 ATTGGAC-TCTGGTCTTATTGTGTTGGTCTTTGGAACCGGAGTAAT--TAAGAACGGACA 28677
Query 202 GTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCT 241
|| || || | ||||| ||||| ||||||| ||||||
Sbjct 28678 GTTGGTGGCATTTGTATTTCATTGTTAGAGGTGTAATTCT 28717
>seq12576
Length=15549
Score = 84.2 bits (92), Expect = 4e-14
Identities = 77/94 (82%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284
|||||||||| |||||||||||| || |||| ||| |||||||||||||| ||||||
Sbjct 1196 GTCAGAGGTGCAATTCTTGGATTGAT-GAAGG---ACTTCTGCGAAAGCGTTCGCCAAGG 1141
Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
| ||||| ||| | | | ||||| ||||| ||||
Sbjct 1140 ACGTTTTGATTCA-CTGAGAACGGAAGTTGGGGG 1108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914831696064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |