Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3618 125 1e-26 seq144 89.7 9e-16 >seq3618 Length=16204 Score = 125 bits (138), Expect = 1e-26 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 AAAAAGCAACGTCGCTATGAACGCTTAGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 60 Query 223 TTCTGGCACCTCTAGCC 239 ||||| |||||||| || Sbjct 61 TTCTGACACCTCTATCC 77 >seq144 Length=45268 Score = 89.7 bits (98), Expect = 9e-16 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 ||| ||||||||||| | |||| || | | ||| | || ||||||||||||| || | | Sbjct 40199 ATGGCGGTCTAAACCAA-CTCATGTGCGCAATTGGCGGATGAACAATCCAACACTGATTG 40141 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 | || ||| ||| ||||||||||||||| | ||||| ||||||| Sbjct 40140 AGTTTTGCCTCGATATGATAGGAAGAGCTGGCATCGGAGGATCA 40097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854056163808