Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq15932 214 5e-53 seq399 178 4e-42 >seq15932 Length=4164 Score = 214 bits (236), Expect = 5e-53 Identities = 140/153 (92%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 || ||||||||||||||||||| |||| ||||| |||||| ||||| ||||||||||| Sbjct 1129 CACGTATTAGCTCTAGAATTACTACGGCTATCCGAGTAGTA-GGTACCATCAAATAAACT 1187 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1188 ATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTATAATCAGCTTATACTTAGACATG 1247 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTA 497 ||||||||||||||||||||||||||||||||| Sbjct 1248 CATGGCTTAATCTTTGAGACAAGCATATGACTA 1280 >seq399 Length=29091 Score = 178 bits (196), Expect = 4e-42 Identities = 169/213 (79%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT---GTGGTA 114 || ||| ||| | || || |||||||||||||| || ||||||||||| || ||||| Sbjct 21594 CCGCCCTGTGCCAGGCTTTGGTAATTTGCGCGCATGGTGCCTTCCTTGCATCACGTGGTT 21653 Query 115 GCCGTTTCTCAGGCTCCC----TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGA 170 || |||||||| | ||| |||||||||||| | |||||||| | || |||||||| Sbjct 21654 GCAGTTTCTCATACACCCCGCCTCTCCGGAATCGGAACCTAATTCTCTGTCACCCGTTGC 21713 Query 171 TACCATGGTAGGCCACTATCCTACCATCGAAAGTTGA--TAGGGCAGAAATTTGAATGAA 228 ||||| ||||||| |||||||||| | | |||||| |||| |||||| ||||||||| Sbjct 21714 CACCATAGTAGGCCTCTATCCTACCCGCAACAGTTGATGTAGGTCAGAAAATTGAATGAA 21773 Query 229 CCATCGCCGGC-TCAAGGCCATGCGATTCGTTA 260 || |||||||| |||||||| ||||| | ||| Sbjct 21774 CCGTCGCCGGCACCAAGGCCAAGCGATACATTA 21806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509792169728