Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7861 93.3 3e-14 seq27800 87.8 1e-12 seq1570 86.0 5e-12 >seq7861 Length=6948 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 66440 GCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCG 66499 || ||||| ||||| |||||||||||||| | ||| | || || || ||||| || ||| Sbjct 4632 GCGTGCCAAGGTTCAAGGTAGATGGCGAAAGCACCCTTTCGCTTTCCACCACCCTGATCG 4691 Query 66500 ACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCA 66559 || ||||| || | |||||||||||| | ||| || |||| ||||| || | || Sbjct 4692 ACATAGCGGGCAGTGTCGTTGAAGACACGAAGCATAGGGACGATGCCGTTCGAGGTTCCG 4751 Query 66560 TTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACC 66618 |||||||| ||| | | || || | || || | || | || || || || || Sbjct 4752 TTGGTGCC-CCGAATGTAACTACTGGTAGAACGGATGTTATGGATGTTGAGGCCGATCCC 4810 Query 66619 ACCGGCCGTCTTCGAGATGGCAGCACAATC 66648 ||||| |||| || || |||||||| || Sbjct 4811 TCCGGCGCTCTTTGAAATTGCAGCACACTC 4840 >seq27800 Length=2063 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 61542 CGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601 ||| ||||||||||||||||| || ||||| ||||| || || |||||||||| ||| | Sbjct 517 CGCTATCTTTTGGTTGAAGAAGCGCGGACTGATGCCGGGGCTCGCCTTCAGCAACGAGCT 576 Query 61602 GATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATT 61649 || | ||||||||||| ||||| | || || ||| | |||| || Sbjct 577 CATCGCTCGCGACGAGGGGATGCACAGAGACTTCGCTCTGCTGCTCTT 624 >seq1570 Length=19022 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 ||| |||| |||||| |||||||| |||||||| | ||| ||| |||||| Sbjct 12218 TTGTTGGCTTTTGCGTGCGTCGAGGGCATATTTTTCTCCGCCAGTTTTTGCGCCATCTTT 12159 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 | |||| || | || || |||||||||||| | |||||||| ||| | || | ||| Sbjct 12158 TACATGAAAAAGCAGGGGCTGATGCCCGGTCTGTCGTTCAGCAACGAGCTCATCGCGCGC 12099 Query 61612 GACGAGGGCATGCATTGTGATTTTGCT 61638 ||||| |||||||| | ||||| ||| Sbjct 12098 GACGAAGGCATGCACCGCGATTTCGCT 12072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397373008177520