Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_029608.1 Length=1045 Score E Sequences producing significant alignments: (Bits) Value seq5971 98.7 6e-18 >seq5971 Length=10314 Score = 98.7 bits (108), Expect = 6e-18 Identities = 183/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 519 TGGTACTGGGGCGAAGCCGGTACTGGGAAGAGCCGCAAAGCGCGCGAA--GACCACCCTC 576 ||||| | ||||| | |||| ||||| || | |||| || || | ||||| ||| Sbjct 708 TGGTATTATGGCGAGACTCGTAC-GGGAA-AGTCTCAAAAAGCCCGTACTGACCATCCTA 651 Query 577 GGGCCTACCTCAAAATGTGCAACAAATGGTGGTGCGGCTATACGGAAGAAGAGACGGTCC 636 || || | || | |||||||| ||||||||||| ||| ||| || || || Sbjct 650 CTGCTTATTTGAAGAACTGCAACAAGTGGTGGTGCGGTTATGAGGACGACAAGGTTGTTA 591 Query 637 TCATAGAGGACTTTGACAAGAAACACGATGTGCTCGGGCACCATCTCAAGATCTGGGGAG 696 |||| |||||||| |||||||| || || |||| ||| | | ||||| |||| | Sbjct 590 TCATTGAGGACTTCGACAAGAAGCATGACATGCTGATACACTTTTTAAAGATTTGGGCTG 531 Query 697 ATCGATACCCATTCCTCGCGGAACTCAAAGGAGACACCATGAAAATACGCCCAAAACAGA 756 | ||||||| || ||||| || | ||| | | | | |||||||| || ||| || Sbjct 530 ACAGATACCCTTTTCTCGCCGAGATTAAATGTGGTAGCCGTAAAATACGGCCTGAACTGA 471 Query 757 TAATAGTTACTAGTAACTACCACCC 781 | |||||||| || || ||||| || Sbjct 470 TTATAGTTACAAGCAATTACCATCC 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3237056044772