Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5 233 6e-59 seq4 102 3e-19 >seq5 Length=3985136 Score = 233 bits (258), Expect = 6e-59 Identities = 138/144 (96%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 268 TCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAA 327 |||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| Sbjct 44452 TCACAAAGTCGGACTAGAGTCAAGCTCAGCAGGGTCTTCTTTCCCCGCTGTTTATTCCAA 44393 Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 44392 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 44333 Query 388 ATCCATTCATGCGCGTCACTAATT 411 |||||||| ||||||||||||||| Sbjct 44332 ATCCATTCGTGCGCGTCACTAATT 44309 >seq4 Length=4222114 Score = 102 bits (112), Expect = 3e-19 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTT 487 |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 3211323 GGCTACCTCAAGAGTGTCATAGTTACTCCCGCCGTTTACCAGCGCTTGGTTGAATTTCTT 3211382 Query 488 CACT 491 |||| Sbjct 3211383 CACT 3211386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635161196704