Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq114 230 2e-55 seq60 82.4 6e-11 >seq114 Length=7431 Score = 230 bits (254), Expect = 2e-55 Identities = 509/756 (67%), Gaps = 8/756 (1%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || ||||||||||| || || ||||||| || || || |||||||| || ||||||||| Sbjct 844 GAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCAC 903 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||||| || ||||||| ||||| || || |||||| ||||| || ||| Sbjct 904 AGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTCC 963 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG- 66192 ||||||| |||||| || ||||| ||||| || | ||| | |||||| ||| || Sbjct 964 TTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCACAGC 1023 Query 66193 AGC-GCGTGC-CTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGG 66250 || ||| || | || | | || ||| | || | ||| ||||| | ||||||| Sbjct 1024 TGCTGCGCGCGCATCGTCTTGCG---CGCGCGGCCCTCGCGCTCGTACCGCGCGTAGAGC 1080 Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310 || || ||||| || || | ||| | || || || || || | ||| Sbjct 1081 GACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAGAACAGG 1140 Query 66311 GACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAG 66370 ||| | || ||| || || || |||||| || || || ||||| || ||||| Sbjct 1141 CTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCCGTAG 1200 Query 66371 AAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430 || || ||||| || || |||||| ||||||| || ||||||| ||| || | || Sbjct 1201 AACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCAGTCC 1260 Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490 | | ||| || ||||| || |||||||| | || || | |||| | || |||||||| Sbjct 1261 ATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCCGCCG 1320 Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550 || ||||| ||||| ||||| | |||||| || |||| ||| || || | ||||| Sbjct 1321 CCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCCGTTG 1380 Query 66551 GATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAG 66609 |||| |||||||| |||| || || ||| || || || ||||| | | ||| Sbjct 1381 CTCGTGCCGTTGGTGCCCCGGATGTACGA-CCCCGTGGCGCGGATGTCGTGCATGTGCAG 1439 Query 66610 ACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCC 66669 || || || || || |||| |||||| || || || | || | | ||||| Sbjct 1440 CCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGTCGTAGATGCC 1499 Query 66670 GTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGT 66729 || ||| ||| ||||| |||| || | |||| || || || || ||| || Sbjct 1500 CTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGGGCGGGGGGT 1559 Query 66730 GGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 | | || |||||| || || | |||||||| || Sbjct 1560 GCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAA 1595 >seq60 Length=8765 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || |||||||| | || || || |||||| ||||| | | ||||| | | Sbjct 2209 GCTTTCTTTGCTGGCTCCGATGGCATCGTCCTGGAGAACCTGGGCGTGCGTTTTATGAAA 2268 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 |||||| || | ||||| ||| || ||||| |||||||||||||| ||||| || Sbjct 2269 GAGGTGACCGTTCCCGAGGCCCGTGCCTTTTACGGGTTCCAGATTGCCATCGAGAACATC 2328 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||||| |||||||||||| | || | || || ||||||| Sbjct 2329 CACTCTGAGATGTACAGTCTGCTGTTGGAGACCTACATCA 2368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397540546190240