Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq114 230 2e-55
seq60 82.4 6e-11
>seq114
Length=7431
Score = 230 bits (254), Expect = 2e-55
Identities = 509/756 (67%), Gaps = 8/756 (1%)
Strand=Plus/Plus
Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073
|| ||||||||||| || || ||||||| || || || |||||||| || |||||||||
Sbjct 844 GAGGCGAGGTTGCACACGGCCGTCTCGTCGGGGGCCGTGTACTCGACGATCTCGGTGCAC 903
Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133
|| || ||||| || ||||||| ||||| || || |||||| ||||| || |||
Sbjct 904 AGGTTGCTGCACTTGATCGTGCCCAGGTTCTGCTGGTTGCTCTTGGCGTTGCAGGCGTCC 963
Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG- 66192
||||||| |||||| || ||||| ||||| || | ||| | |||||| ||| ||
Sbjct 964 TTGTACAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGCCTCCAAAATGGCGAACCACAGC 1023
Query 66193 AGC-GCGTGC-CTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGG 66250
|| ||| || | || | | || ||| | || | ||| ||||| | |||||||
Sbjct 1024 TGCTGCGCGCGCATCGTCTTGCG---CGCGCGGCCCTCGCGCTCGTACCGCGCGTAGAGC 1080
Query 66251 TGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGC 66310
|| || ||||| || || | ||| | || || || || || | |||
Sbjct 1081 GACTCAAACTCGGGGCCCCACACGTCCGCCAGGCCCGGCGCCTCGTTGGGGCAGAACAGG 1140
Query 66311 GACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAG 66370
||| | || ||| || || || |||||| || || || ||||| || |||||
Sbjct 1141 CTCCACTGCCCGTCCGCCTCGACGCGCTTCATAAACAGGTCGGGGATCCACAGCCCGTAG 1200
Query 66371 AAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCA 66430
|| || ||||| || || |||||| ||||||| || ||||||| ||| || | ||
Sbjct 1201 AACAGGTCGCGGGCGCGAGCCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCCAGCCAGTCC 1260
Query 66431 AAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCA 66490
| | ||| || ||||| || |||||||| | || || | |||| | || ||||||||
Sbjct 1261 ATCACGTCCGCGTGCCAGGGCTCCAGGTACACCGCAAAGGCGCCCTTGCGCTTGCCGCCG 1320
Query 66491 CCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTA 66550
|| ||||| ||||| ||||| | |||||| || |||| ||| || || | |||||
Sbjct 1321 CCCTGGTCCACGTACCGAGCCGTGTCGTTGAACACGCGCAGCATGGGCACCACGCCGTTG 1380
Query 66551 GATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAG 66609
|||| |||||||| |||| || || ||| || || || ||||| | | |||
Sbjct 1381 CTCGTGCCGTTGGTGCCCCGGATGTACGA-CCCCGTGGCGCGGATGTCGTGCATGTGCAG 1439
Query 66610 ACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCC 66669
|| || || || || |||| |||||| || || || | || | | |||||
Sbjct 1440 CCCGATGCCGCCCGCGCTCTTGCTGATGGCCGCGCACTCCTTGAGCGTGTCGTAGATGCC 1499
Query 66670 GTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGT 66729
|| ||| ||| ||||| |||| || | |||| || || || || ||| ||
Sbjct 1500 CTCGATGCTGTCGCCCTTCATGGCCACCAAAAAGCAGCTGCTCAGCTGCGGGCGGGGGGT 1559
Query 66730 GGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765
| | || |||||| || || | |||||||| ||
Sbjct 1560 GCCCGCGTTGAAGAGCGTCGGCGACGCGTGCGTGAA 1595
>seq60
Length=8765
Score = 82.4 bits (90), Expect = 6e-11
Identities = 114/160 (71%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| |||||||| | || || || |||||| ||||| | | ||||| | |
Sbjct 2209 GCTTTCTTTGCTGGCTCCGATGGCATCGTCCTGGAGAACCTGGGCGTGCGTTTTATGAAA 2268
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332
|||||| || | ||||| ||| || ||||| |||||||||||||| ||||| ||
Sbjct 2269 GAGGTGACCGTTCCCGAGGCCCGTGCCTTTTACGGGTTCCAGATTGCCATCGAGAACATC 2328
Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
||||| |||||||||||| | || | || || |||||||
Sbjct 2329 CACTCTGAGATGTACAGTCTGCTGTTGGAGACCTACATCA 2368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397540546190240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |