Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_
202014-05-13] 5,666 sequences; 12,373,820 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq2188 147 9e-30
seq2817 120 1e-21
seq3218 95.1 5e-14
seq2089 95.1 5e-14
>seq2188
Length=2021
Score = 147 bits (162), Expect = 9e-30
Identities = 196/269 (73%), Gaps = 15/269 (6%)
Strand=Plus/Plus
Query 351009 GGTTGGCCTGCGGGCTCACCATGTTGGAGGCCACGTCCATGAGGGTGGCTCCG---TCGG 351065
|||||||||| |||||||| ||||||| || ||| |||||| | | | | ||||
Sbjct 1133 GGTTGGCCTGAGGGCTCACGATGTTGGCGGGGACGGCCATGA---TCTCCCGGACCTCGG 1189
Query 351066 CGCGCGCGGCCAGATCCTGCACGGCGTGGCCGTTGGTCTCGTCTCCGTCAAAGTCGGCGT 351125
||||| ||| | |||||||||||| ||| ||||||| ||||| ||||||||||
Sbjct 1190 CGCGCACGGGATGGCTCTGCACGGCGTGCATGTTCATCTCGTCGCCGTCGAAGTCGGCGT 1249
Query 351126 TGTAGGGCTGGGTGACCGACGGGTTGATGCCGA---TGGTGTAGCCCCGCGGGTTGCGCC 351182
|||||||| ||| |||||| |||||| | || || ||||| || | ||||
Sbjct 1250 TGTAGGGCGAGGTCACCGACAGGTTGAGCCGGAACGTGCTGTAG---GGCAAGATGCG-- 1304
Query 351183 TCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGA 351242
|||||| ||| |||| |||||| ||||| |||| |||||| || ||| ||||| |
Sbjct 1305 -CACGCGATGCCCCATCATGGACATCTTGTGCAGCGAGGGCTGCCGGTTGAAGATGACCA 1363
Query 351243 TGTCGCCATCGCGCAAGTGCCTCTCCACC 351271
|||||| | | | ||||| |||||||
Sbjct 1364 GGTCGCCGTTGGTGAGGTGCCGCTCCACC 1392
>seq2817
Length=1589
Score = 120 bits (132), Expect = 1e-21
Identities = 95/114 (83%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131
||||| || ||||||||| || | |||| |||||| ||||||||| || |||||||||
Sbjct 127 GGCGTTGACAATCTCCTTCAGACGCGGCACGCCCAGCGTCACGTTCATGCTCGCGACGCC 68
Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTG 349185
||||||||| || |||| ||| |||| ||||||| ||||||||||||| ||||
Sbjct 67 GGCAAAGTGAAACGTCTTGAGCGTCATCTGCGTGCCGGGCTCGCCGATGGACTG 14
>seq3218
Length=1360
Score = 95.1 bits (104), Expect = 5e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046
|||||| | | | || |||||||||||||||| | | |||||||||||||||| |||
Sbjct 1048 CTCGAGGATCTTCCCGACGGTCATGCGCGACGGGAACCCGTGCGGGTTCATGATGAGGTC 989
Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106
||| | | || | || ||||||||| |||| ||| || || | ||| ||
Sbjct 988 CGGCAGCACTCCCCGCTCGCTGAAGGGCAGGTCCACGGCGTCCACGATGGCGCCCACCAC 929
Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151
|||||| || |||||||| |||||||||| ||| |||||||
Sbjct 928 GCCCTTTTGCCCGTGGCGCGACGAGAACTTGTCTCCCAGCTCGGG 884
>seq2089
Length=2118
Score = 95.1 bits (104), Expect = 5e-14
Identities = 120/165 (73%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046
|||||| | | | || |||||||||||||||| | | |||||||||||||||| |||
Sbjct 640 CTCGAGGATCTTCCCGACGGTCATGCGCGACGGGAACCCGTGCGGGTTCATGATGAGGTC 581
Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106
||| | | || | || ||||||||| |||| ||| || || | ||| ||
Sbjct 580 CGGCAGCACTCCCCGCTCGCTGAAGGGCAGGTCCACGGCGTCCACGATGGCGCCCACCAC 521
Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151
|||||| || |||||||| |||||||||| ||| |||||||
Sbjct 520 GCCCTTTTGCCCGTGGCGCGACGAGAACTTGTCTCCCAGCTCGGG 476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084584165763468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |