Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helicosporidium_20sp._20ATCC_2050920_20[genbank_20GCA_5F000690575.1_ 202014-05-13] 5,666 sequences; 12,373,820 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq2188 147 9e-30 seq2817 120 1e-21 seq3218 95.1 5e-14 seq2089 95.1 5e-14 >seq2188 Length=2021 Score = 147 bits (162), Expect = 9e-30 Identities = 196/269 (73%), Gaps = 15/269 (6%) Strand=Plus/Plus Query 351009 GGTTGGCCTGCGGGCTCACCATGTTGGAGGCCACGTCCATGAGGGTGGCTCCG---TCGG 351065 |||||||||| |||||||| ||||||| || ||| |||||| | | | | |||| Sbjct 1133 GGTTGGCCTGAGGGCTCACGATGTTGGCGGGGACGGCCATGA---TCTCCCGGACCTCGG 1189 Query 351066 CGCGCGCGGCCAGATCCTGCACGGCGTGGCCGTTGGTCTCGTCTCCGTCAAAGTCGGCGT 351125 ||||| ||| | |||||||||||| ||| ||||||| ||||| |||||||||| Sbjct 1190 CGCGCACGGGATGGCTCTGCACGGCGTGCATGTTCATCTCGTCGCCGTCGAAGTCGGCGT 1249 Query 351126 TGTAGGGCTGGGTGACCGACGGGTTGATGCCGA---TGGTGTAGCCCCGCGGGTTGCGCC 351182 |||||||| ||| |||||| |||||| | || || ||||| || | |||| Sbjct 1250 TGTAGGGCGAGGTCACCGACAGGTTGAGCCGGAACGTGCTGTAG---GGCAAGATGCG-- 1304 Query 351183 TCACGCGGTGCACCATGATGGACCCGTTGTGGAGCGTGGGCTGGCGATTGTGGATGATGA 351242 |||||| ||| |||| |||||| ||||| |||| |||||| || ||| ||||| | Sbjct 1305 -CACGCGATGCCCCATCATGGACATCTTGTGCAGCGAGGGCTGCCGGTTGAAGATGACCA 1363 Query 351243 TGTCGCCATCGCGCAAGTGCCTCTCCACC 351271 |||||| | | | ||||| ||||||| Sbjct 1364 GGTCGCCGTTGGTGAGGTGCCGCTCCACC 1392 >seq2817 Length=1589 Score = 120 bits (132), Expect = 1e-21 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || ||||||||| || | |||| |||||| ||||||||| || ||||||||| Sbjct 127 GGCGTTGACAATCTCCTTCAGACGCGGCACGCCCAGCGTCACGTTCATGCTCGCGACGCC 68 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTG 349185 ||||||||| || |||| ||| |||| ||||||| ||||||||||||| |||| Sbjct 67 GGCAAAGTGAAACGTCTTGAGCGTCATCTGCGTGCCGGGCTCGCCGATGGACTG 14 >seq3218 Length=1360 Score = 95.1 bits (104), Expect = 5e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 |||||| | | | || |||||||||||||||| | | |||||||||||||||| ||| Sbjct 1048 CTCGAGGATCTTCCCGACGGTCATGCGCGACGGGAACCCGTGCGGGTTCATGATGAGGTC 989 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106 ||| | | || | || ||||||||| |||| ||| || || | ||| || Sbjct 988 CGGCAGCACTCCCCGCTCGCTGAAGGGCAGGTCCACGGCGTCCACGATGGCGCCCACCAC 929 Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 |||||| || |||||||| |||||||||| ||| ||||||| Sbjct 928 GCCCTTTTGCCCGTGGCGCGACGAGAACTTGTCTCCCAGCTCGGG 884 >seq2089 Length=2118 Score = 95.1 bits (104), Expect = 5e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 |||||| | | | || |||||||||||||||| | | |||||||||||||||| ||| Sbjct 640 CTCGAGGATCTTCCCGACGGTCATGCGCGACGGGAACCCGTGCGGGTTCATGATGAGGTC 581 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106 ||| | | || | || ||||||||| |||| ||| || || | ||| || Sbjct 580 CGGCAGCACTCCCCGCTCGCTGAAGGGCAGGTCCACGGCGTCCACGATGGCGCCCACCAC 521 Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 |||||| || |||||||| |||||||||| ||| ||||||| Sbjct 520 GCCCTTTTGCCCGTGGCGCGACGAGAACTTGTCTCCCAGCTCGGG 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084584165763468